PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909437.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 706aa    MW: 79204.9 Da    PI: 5.1099
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909437.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07120141527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +f++ G+C  GdrC+F+Hgp
  XP_010909437.1 120 PCYYFQK-GHCLKGDRCSFMHGP 141
                     7******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5962049IPR000571Zinc finger, CCCH-type
SMARTSM003560.00342148IPR000571Zinc finger, CCCH-type
PfamPF156638.6E-122175No hitNo description
PROSITE profilePS5010311.4135177IPR000571Zinc finger, CCCH-type
SMARTSM003560.0785376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6115140IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5116141IPR000571Zinc finger, CCCH-type
PfamPF146080.56120140No hitNo description
Gene3DG3DSA:4.10.1000.106.5E-5120142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MESGGGREQT RPLTAEEEAL KRNTDCVYFL ASPLTCKKGT ECEYRHSEGA RVNPRDCWYW  60
LNGNCLNPRC TFRHPPLDGL FGNPGTASGL VPPPSQNVAL IHVPATHDPA AYNLNKSNIP  120
CYYFQKGHCL KGDRCSFMHG PQQTGNPVSQ QVMKVLTPPD LVSTIQKDSL GLKECTSQQI  180
DEANCDKLVE MPLAPIKPTA KSENLPDNGF TYKQTPSPYP SEDEPPSFLQ GNASVNSGIA  240
LGQPQSHQSQ SIDEHVQNGR EADESLRESS PGFDVLVDDN VEESDYFHEE GDFRRASVQG  300
GRNLNHVSDF DYHHSDYEPL LSLERDQYNG ACEYDRYGRL DNRYRQEQQR ISSERILDRA  360
PMPEKKVLQR EKRYNDIDGS DLRHQLLKRQ RLDGSRLALS PDHCSSLYQR DNHARHAHRR  420
IHMESSISSR LQGRITLPAR SLPDRPTDLQ SDKDKDKRRH KGRSSPVRSI KGRYHDKIKR  480
PPHEDFSDVR NVGGQPIRRV DAHPLNFAGP KSLAELKGAK LSENFQDQKN LKLGKALGHQ  540
DPECSSFEGP KPLSVILKRK REPASGNAAI SSNGDDNNQK DIEGEFGSSI TAVTEKEGNY  600
TANCPEKSKV TRVDEEEEEG MIPTEEELPN DGQTSAKGNT HEVQDGITVD AMGDQEMENY  660
GQRDGDSDYE AVEGGEFQPE DDENAYQEDE EDDEDDFAKK VGAMFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909437.10.0zinc finger CCCH domain-containing protein 32
TrEMBLA0A2H3X1140.0A0A2H3X114_PHODC; zinc finger CCCH domain-containing protein 32-like
STRINGXP_008776702.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241