PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909431.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family DBB
Protein Properties Length: 211aa    MW: 23525.6 Da    PI: 6.7194
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909431.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.82.2e-08333434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    ++C+ +e+ ++ lfC  ++  lC++C ++ H
  XP_010909431.1  3 TICDVCESAPAVLFCAADEAALCRSCDEKVH 33
                    68**************************998 PP
2zf-B_box27.37.6e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_010909431.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHE 92
                    789***************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.324147IPR000315B-box-type zinc finger
CDDcd000215.68E-8345No hitNo description
PfamPF006431.0E-6341IPR000315B-box-type zinc finger
PROSITE profilePS501199.3145196IPR000315B-box-type zinc finger
SMARTSM003363.0E-115196IPR000315B-box-type zinc finger
PfamPF006439.3E-75292IPR000315B-box-type zinc finger
CDDcd000211.12E-65493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HERYLLLRQR VKFQGDKPGH IEDLSMHPKD  120
QVEQQRDHNQ VPKMIMREKL PNHQLSTDPA INANSDGRGK INSKMIDLNT RPIRTHGQAS  180
NTQTQEVDHL SNSNHDAAGV VPSGPFQRDA E
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909431.11e-157B-box zinc finger protein 19 isoform X3
SwissprotC0SVM53e-81BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2H3XM251e-138A0A2H3XM25_PHODC; B-box zinc finger protein 19-like isoform X1
STRINGXP_008785801.11e-139(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-83DBB family protein