PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GeBP | ||||||||
Protein Properties | Length: 469aa MW: 49758.1 Da PI: 4.3866 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 104.7 | 7.2e-33 | 167 | 266 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 lfqrlw++e ei++LqG+++f++++g+ +++ d+ fye +kk+++++++k+ql+eK+rrLKkK+++ v++ ++ gk+++f+++h+++i++++ XP_010909354.1 167 LFQRLWTDEEEITILQGFLEFTSRRGTtfASHQyDTGPFYEEIKKRLQLEFTKNQLIEKLRRLKKKYRNVVSRmRSMGKDFAFRSSHEKDIYDIA 261 79************************99877778**************************************97889****************** PP DUF573 93 kkiWg 97 + iW XP_010909354.1 262 RNIWS 266 ****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-30 | 168 | 266 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MPSAEDEEER AFFDDDDDDD DMEGDDSEEE EEEDYEDDDA EAVQPPAFAG VAVAAAPPLL 60 AKPAEEGLNG TTPSTSSSDR AAPNANPPSN PNPNPATAAD PGFAPQNGAI PILPLSAAAP 120 STPAATAAGG LCTPSSSDPV TQPYEDRKPF PVAVAAVGGG YDDSRRLFQR LWTDEEEITI 180 LQGFLEFTSR RGTTFASHQY DTGPFYEEIK KRLQLEFTKN QLIEKLRRLK KKYRNVVSRM 240 RSMGKDFAFR SSHEKDIYDI ARNIWSANVK RARDSDDDDL NTPNNAYAIE AVSAPDGAMN 300 SDRRMSRSRR RFRRRTAEAA TATAASASPA TVGVPVGNSV PVTQVPSSSA AAAIPGIIEE 360 TVKSCLSPLF KELIYSATGG PLGPGLSGGA GLLGLGPGPG PGLGGGAAAL SPIPFCLGGS 420 PASLPGSGAA VDEKWKKQQI LELEVYLKRI ELLQDQIKST LEELKSSGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909354.3 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_029118106.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_029118108.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2H3YLJ5 | 1e-176 | A0A2H3YLJ5_PHODC; probable transcription factor At3g04930 | ||||
STRING | XP_008800322.1 | 1e-177 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 9e-38 | DNA-binding storekeeper protein-related transcriptional regulator |