PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909265.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

BES1

Protein Properties

Length: 699aa MW: 78417.3 Da PI: 5.7999

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909265.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	122.2	6.8e-38	84	156	4	76
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 +r + +E+E++k RER+RRai+a+i++GLR++Gny+l++raD+neV+ AL+reAGw v +DGtt++ s XP_010909265.1 84 RRPRAKEEKERTKMRERHRRAITARILSGLRRHGNYNLRARADINEVISALAREAGWAVLPDGTTFPSRSASS 156 34455668**********************************************************9443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.0E-34	84	166	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	6.49E-190	256	694	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.4E-208	259	693	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	8.5E-111	265	683	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	296	310	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	317	335	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	339	360	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.1E-11	422	431	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.3E-76	432	454	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	505	524	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	539	555	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	556	567	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.3E-76	574	597	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.1E-11	577	587	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.3E-76	614	636	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.1E-11	665	679	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.1E-11	680	694	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MAQEMEKLGG TSEEEDDEEM EMEVKEEEDE EEEEEERGSG SREAAVMGMV AQPAGEDMGG 60 RYFQQPGRID GGGGXGLMQG VVMRRPRAKE EKERTKMRER HRRAITARIL SGLRRHGNYN 120 LRARADINEV ISALAREAGW AVLPDGTTFP SRSASSSPQG PPATSSVAPA HIQPLRGVSP 180 GGLRSAEFRP LKGVFTPTAA SASASYDGRC RTSVMMGGHR ERMVDSLPLA ASCTDGVHGK 240 QVADILPTHR MPEHDFAGTP YVPVYVMLPL GVINMKCELA DPKSLIKQLR ILRSVNVDGV 300 MVDCWWGIVE AHAPQEYNWN GYKRLFQIVR ELKLKLQVVM SFHECGGNIG DDVCIPLPHW 360 VAEIGRSNPE IFFTDREGRR NPECLSWGID KERVLRGRTA LEVYFDYMRS FRVEFDEFFE 420 DGIISEIEVG LGPCGELRYP SYPVKHGWRY PGIGEFQCYD QYLMKSLRKA AEARGHSFWA 480 RGPDNAGFYN SQPHETGFFC DGGDYDSYYG RFFLNWYSQV LVDHADRVLS LAKLAFEGTC 540 IAAKISGVHW WYKTASHAAE LTAGFYNPCN RDGYASIASM LKRHGAALNF TCAELRTLDQ 600 HKEFPEALAD PEGLVWQVLN AAWDVCIPVA SENALPCHDR AGYNKILENS KPMNDPDGRH 660 LSAFTYLRLS PDLMESHNFL EFERFVKRMH GEAVLDLQA

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MAQEMEKLGG TSEEEDDEEM EMEVKEEEDE EEEEEERGSG SREAAVMGMV AQPAGEDMGG  60
RYFQQPGRID GGGGXGLMQG VVMRRPRAKE EKERTKMRER HRRAITARIL SGLRRHGNYN  120
LRARADINEV ISALAREAGW AVLPDGTTFP SRSASSSPQG PPATSSVAPA HIQPLRGVSP  180
GGLRSAEFRP LKGVFTPTAA SASASYDGRC RTSVMMGGHR ERMVDSLPLA ASCTDGVHGK  240
QVADILPTHR MPEHDFAGTP YVPVYVMLPL GVINMKCELA DPKSLIKQLR ILRSVNVDGV  300
MVDCWWGIVE AHAPQEYNWN GYKRLFQIVR ELKLKLQVVM SFHECGGNIG DDVCIPLPHW  360
VAEIGRSNPE IFFTDREGRR NPECLSWGID KERVLRGRTA LEVYFDYMRS FRVEFDEFFE  420
DGIISEIEVG LGPCGELRYP SYPVKHGWRY PGIGEFQCYD QYLMKSLRKA AEARGHSFWA  480
RGPDNAGFYN SQPHETGFFC DGGDYDSYYG RFFLNWYSQV LVDHADRVLS LAKLAFEGTC  540
IAAKISGVHW WYKTASHAAE LTAGFYNPCN RDGYASIASM LKRHGAALNF TCAELRTLDQ  600
HKEFPEALAD PEGLVWQVLN AAWDVCIPVA SENALPCHDR AGYNKILENS KPMNDPDGRH  660
LSAFTYLRLS PDLMESHNFL EFERFVKRMH GEAVLDLQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1uko_A	1e-161	261	692	11	444	Beta-amylase
1uko_B	1e-161	261	692	11	444	Beta-amylase
1uko_C	1e-161	261	692	11	444	Beta-amylase
1uko_D	1e-161	261	692	11	444	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777296.1	0.0	beta-amylase 2, chloroplastic isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A2H3X2G4	0.0	A0A2H3X2G4_PHODC; Beta-amylase
STRING	XP_008777295.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]