PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Trihelix | ||||||||
Protein Properties | Length: 865aa MW: 95411.1 Da PI: 9.0031 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.5 | 6.2e-17 | 793 | 854 | 1 | 62 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 +W+ +e ++Li++r e+++r+r+ k+++ lWee+s + ++g++r+p qCk+ w +l ++y+ XP_010909138.1 793 KWKPEEMKQLIKMRGELDNRFRTVKARMILWEEISVSLLKHGVNRTPAQCKSLWASLVQKYE 854 7***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 7.5E-62 | 78 | 333 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 6.15E-66 | 79 | 498 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 3.1E-17 | 91 | 293 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 2.4E-7 | 103 | 243 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 1.7E-5 | 441 | 470 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 8.049 | 786 | 850 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 789 | 852 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-4 | 790 | 852 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-11 | 791 | 854 | No hit | No description |
CDD | cd12203 | 6.80E-21 | 792 | 854 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MVCLSVLPSL CPCGLSGRPR LPKSIVRCSL GSSSSVPGAQ ELEVSRRKSR RTEGVRKSME 60 DPVQRKLEQF YEGLDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDEFGV 120 QKIVPDTTFI KRWSHKIEAV VITHGHEDHI VSASYCSVKQ VIPALDSHTP IFASSFTMEL 180 IKKRLKEFGI FVLSRLRLFT IRKKFLAGPF EVEPIRVTHS IPDCCGLVLR CSDGTILHTG 240 DWKIDESPLD GKIFDRETLE DLSKEGVTLM MSDSTNVLSP GRSVSEAVVA DALLRHISAA 300 KGRVIATQFA SNIHRLGSVK AAADLTGRKL VFVGMSLRTY LDAAFKDGKA PMDPSTLVKV 360 EDIDGYAPKD LLIVTTGSQG EPRSALNLAS FGSSHSLKLG KDDVILYSAK VIPGNETRVM 420 KMLNRISDRG PTIVMGKNSG LHTSGHGYRG ELEEVLRIVK PQHFLPIHGE LFFLKEHELL 480 GRSTGIRHTA VIKNGEMLGV SHLRNRRVLS NGFASLGKEE LQLMYSDGDK AFGTSTELCI 540 DERLRIATDG IIVVSMEVLR PQNVNGSSQT CLKGKIRITT RCLWLDKGKL LDALYKAAHA 600 ALSSCPVSCP LAHMERIVSE VLRKIVRKYS SRRPEVIAVA VENTVGVLSE ELRSRLLGKS 660 HGGFGLSALG QRANIHLRKV SSSKFEEDTD SMDVTENLTE DESEGDGADL EQPRTEDAIT 720 NNLGESSSHA STKLEDLLKS LKGSSAVQVP KVANSFVLEE NLKLSKDGKV GNRENIKPSD 780 PEPVTTKPAK RNKWKPEEMK QLIKMRGELD NRFRTVKARM ILWEEISVSL LKHGVNRTPA 840 QCKSLWASLV QKYEVLAQFP FFTGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 2e-83 | 79 | 642 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 2e-83 | 79 | 642 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 2e-83 | 79 | 642 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 2e-83 | 79 | 642 | 19 | 560 | RIBONUCLEASE J |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029117749.1 | 0.0 | ribonuclease J isoform X2 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A2H3ZCK6 | 0.0 | A0A2H3ZCK6_PHODC; ribonuclease J | ||||
STRING | XP_008811801.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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