PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909135.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 444aa    MW: 49050.7 Da    PI: 6.6661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909135.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-18150196148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd llv++v+q+G + W+ Ia+++  gR +kqc++rw+++l
   XP_010909135.1 150 KGQWTLEEDRLLVKLVEQYGLRKWSHIAQMLR-GRIGKQCRERWHNHL 196
                      799*****************************.*************97 PP
2Myb_DNA-binding56.27.8e-18202244145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+
   XP_010909135.1 202 KDTWSEEEDRILIQAHSEVGNK-WAEIAKRLP-GRTENSIKNHWN 244
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.745145200IPR017930Myb domain
SuperFamilySSF466896.47E-32147243IPR009057Homeodomain-like
SMARTSM007171.1E-16149198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-24151200IPR009057Homeodomain-like
PfamPF139216.7E-18153209No hitNo description
CDDcd001672.25E-16153196No hitNo description
PROSITE profilePS5129422.52201251IPR017930Myb domain
SMARTSM007174.4E-18201249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22201249IPR009057Homeodomain-like
CDDcd001671.36E-14204247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDFGRLKTHT GNGIPLEPCV SADELQDFQH FDDAFYHVPT VMVDAYPSGF DFKALSSPPV  60
GLQIGMPVDD FGLSSGYSQR SLSGRMGPDP SLSSMVLSAE PLMAFGPPDE LSFVAGDNKS  120
CRGGVEMNRK CTPVKKGSGA KSHKKPNLVK GQWTLEEDRL LVKLVEQYGL RKWSHIAQML  180
RGRIGKQCRE RWHNHLRPNI KKDTWSEEED RILIQAHSEV GNKWAEIAKR LPGRTENSIK  240
NHWNATKRRQ FSRRRCRNSK YPKSGSLLQN YIKSLSLQGY SAPTIPGASV AATNAPADKH  300
LKIIETNDGG SEASMTLTCI SAEGGPPIVV GADVCGGIDD ILTCDFSDMA NLLLDDNKVD  360
VPPERYMGYL FDQLGCSSPG MKGWFDVEMA WDEMANPMSM SLPMPCEVDM KVKVKKEMDL  420
VEMIAQNNNA DSTSSSSSST CDQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-491482502104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-491482502104C-Myb DNA-Binding Domain
1msf_C2e-491482502104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909135.10.0uncharacterized protein LOC105035310
TrEMBLA0A2H3ZHF60.0A0A2H3ZHF6_PHODC; uncharacterized protein LOC103724184
STRINGXP_008813584.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-71myb domain protein 98