PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 25558.6 Da PI: 10.7033 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 9.1e-22 | 17 | 61 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krie++ rqv fskRr g++KKA+ELS+LC+ae+ vi+fs+ g+ XP_010909111.1 17 KRIESEEARQVCFSKRRVGLFKKANELSILCGAEIGVIVFSPAGQ 61 79****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.618 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-28 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-35 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.08E-38 | 10 | 78 | No hit | No description |
PRINTS | PR00404 | 3.2E-20 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-20 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-20 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MATRRKPSMG RQKIEIKRIE SEEARQVCFS KRRVGLFKKA NELSILCGAE IGVIVFSPAG 60 QPFSFGHPSV DSIIDRFLSG GPSPPTLASA DRRMPAAREM MVVRELNRQY TELAALLETE 120 RRRKVVLEEA VRVKRAGEAA LWGANVDELG LGELERLHKS LERLRRDVAR CADQLVIEAA 180 HARSSSIAAA SRSTAPPPPP GIHLGFGRGL EGSMALILPP PPTPTAFGYG RGLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 5e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 5e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 5e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 6e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 6e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 6e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 6e-17 | 9 | 77 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909111.1 | 1e-167 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2H3XTF6 | 1e-131 | A0A2H3XTF6_PHODC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_008788342.1 | 1e-132 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-41 | AGAMOUS-like 62 |