PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909039.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 344aa    MW: 37115.5 Da    PI: 9.2859
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909039.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.3e-32172228158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  XP_010909039.1 172 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHLHAMRRARGCGGRF 228
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-37170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.666171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.0E-28173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-24174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-24205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MESRAEGTNT VDANGQGALP STINAQPWWR GPGFGVISPS ILADSASKSA SVNLPVGGAR  60
NKGGQAQSHD RADGTGDVSK EMQNIGSQRD GSFGQEHHHL QPVSSTMPPM MPEYLAPHTQ  120
LELGQSIACA TYSYSDPYLS RVMAPYGTQA LVHPQLLGMP YTRMPLPLEM TEEPVYVNAK  180
QYHGILRRRQ SRAKAELEKK VIKVRKPYLH ESRHLHAMRR ARGCGGRFLN TKKAEANAAI  240
TNPENGGNTG ASIPTQSASS SASPVLPSNC PGSNMNEIKR PVVQDICEAQ AYTNGNDGYK  300
QQSGFQLSSF HSKSGERVEE GDCSGQQRGG ILVNRPPNRA VAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20171236166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909039.10.0nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010909040.10.0nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010909041.10.0nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010909042.10.0nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010909043.10.0nuclear transcription factor Y subunit A-7 isoform X1
TrEMBLA0A2H3XYY80.0A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-52nuclear factor Y, subunit A9