PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908987.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 266aa    MW: 28601.3 Da    PI: 7.638
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908987.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16179215135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_010908987.1 179 CQNCGISEklTPAMRRGPSGPRTLCNACGLMWANKGT 215
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-84479IPR010399Tify domain
PROSITE profilePS5132014.4954479IPR010399Tify domain
PfamPF062002.7E-124578IPR010399Tify domain
PfamPF062033.1E-15106147IPR010402CCT domain
PROSITE profilePS5101713.007106148IPR010402CCT domain
SMARTSM004016.7E-10173227IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.803173230IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11178225No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14178219IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.01E-14179220No hitNo description
PROSITE patternPS003440179206IPR000679Zinc finger, GATA-type
PfamPF003201.3E-13179215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDGQHGLPPS DPPACEKQEI PDGTAAAGGP LDQDEGIDAA VSLVSPTSNQ LTLLYQGEAY  60
VFESVSPEKV QAVLLLLGGC EMPSGSAGMA LPCLQDDRYT TMPAKRIASL IRFREKRKER  120
CFDKKIRYNV RKEVALRMKR RKGQFAGKTN PEDEASASSS CDPAQSSSHD DNPREMKNCQ  180
NCGISEKLTP AMRRGPSGPR TLCNACGLMW ANKGTLRSVS TASKMGIQNP VNPNELPGSV  240
GSEMKSDNKA VLTSNNHDSG VTIAEM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908987.10.0GATA transcription factor 19 isoform X1
SwissprotA2XKR77e-81GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A2H3WZ281e-150A0A2H3WZ28_PHODC; GATA transcription factor 19-like
STRINGXP_008775860.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-64ZIM-LIKE 2