PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 28601.3 Da PI: 7.638 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 179 | 215 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp+g++tLCnaCGl+++ kg+ XP_010908987.1 179 CQNCGISEklTPAMRRGPSGPRTLCNACGLMWANKGT 215 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.3E-8 | 44 | 79 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.495 | 44 | 79 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.7E-12 | 45 | 78 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.1E-15 | 106 | 147 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.007 | 106 | 148 | IPR010402 | CCT domain |
SMART | SM00401 | 6.7E-10 | 173 | 227 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.803 | 173 | 230 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-11 | 178 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-14 | 178 | 219 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.01E-14 | 179 | 220 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 179 | 206 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-13 | 179 | 215 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDGQHGLPPS DPPACEKQEI PDGTAAAGGP LDQDEGIDAA VSLVSPTSNQ LTLLYQGEAY 60 VFESVSPEKV QAVLLLLGGC EMPSGSAGMA LPCLQDDRYT TMPAKRIASL IRFREKRKER 120 CFDKKIRYNV RKEVALRMKR RKGQFAGKTN PEDEASASSS CDPAQSSSHD DNPREMKNCQ 180 NCGISEKLTP AMRRGPSGPR TLCNACGLMW ANKGTLRSVS TASKMGIQNP VNPNELPGSV 240 GSEMKSDNKA VLTSNNHDSG VTIAEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010908987.1 | 0.0 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | A2XKR7 | 7e-81 | GAT18_ORYSI; GATA transcription factor 18 | ||||
TrEMBL | A0A2H3WZ28 | 1e-150 | A0A2H3WZ28_PHODC; GATA transcription factor 19-like | ||||
STRING | XP_008775860.1 | 1e-151 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 4e-64 | ZIM-LIKE 2 |