PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908855.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 773aa    MW: 84337.8 Da    PI: 5.9828
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908855.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-20101156156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_010908855.1 101 KKRYHRHTQHQIQEMENFFKTCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 156
                     688999***********************************************999 PP
2START219.88.7e-692925121206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+W+ +     e +n++e++++f+++ +      ++ea+r+++vv+m++ +l+e l+d++ qW+  +     +a tl
  XP_010908855.1 292 ELAVAAMEELIRMAQLGEPLWTPDLdsstETLNEEEYVRTFPRGIGpkpfgLKSEASRDTAVVIMNHINLLEMLMDVN-QWSMVFSsivsRAVTL 385
                     57899*****************9999999**************999********************************.*******9**9***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+ds ++ p      R++++pSg+li++++ng+skv+wvehv
  XP_010908855.1 386 EVLSTGvagnynGALQVMSAEFQVPSPLVPtRESLFVRYCKQHAEGTWAVVDVSLDSLRPSPA----LRCRRRPSGCLIQEMPNGYSKVIWVEHV 476
                     ************************************************************995....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r++h+++++lv+sgla+gak+wv+tl+rqce+
  XP_010908855.1 477 EVDDRSVHNIYKPLVNSGLAFGAKRWVSTLDRQCER 512
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2182156IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1989159IPR009057Homeodomain-like
PROSITE profilePS5007116.90898158IPR001356Homeobox domain
SMARTSM003891.2E-1999162IPR001356Homeobox domain
CDDcd000862.89E-19100159No hitNo description
PfamPF000461.8E-17101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084844.28283515IPR002913START domain
SuperFamilySSF559612.42E-36285514No hitNo description
CDDcd088759.93E-127287511No hitNo description
SMARTSM002347.6E-67292512IPR002913START domain
PfamPF018524.1E-57293512IPR002913START domain
Gene3DG3DSA:3.30.530.208.6E-5394511IPR023393START-like domain
SuperFamilySSF559611.1E-24531764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MPTGIMIPAR HVPSMIGRNA GAGFGSSSAL SLGQPNILEG QQLPLQHQHQ QPNQLFEIPQ  60
TTTAESEMVR TREEEFESKS GSENIEGASG DDQDANQRPR KKRYHRHTQH QIQEMENFFK  120
TCPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKTQQE RHENTQLRAE NEKLRAENLR  180
YKEALSNASC PNCGGPAALG EMSFDEHHLR IENARLREEI DRISGIAAKY VGKPMVSYPL  240
LSSPLASRSP MDLGVSGGFG VQPGIGGEMF GAGELLRTVS GQLEIEKPVV IELAVAAMEE  300
LIRMAQLGEP LWTPDLDSST ETLNEEEYVR TFPRGIGPKP FGLKSEASRD TAVVIMNHIN  360
LLEMLMDVNQ WSMVFSSIVS RAVTLEVLST GVAGNYNGAL QVMSAEFQVP SPLVPTRESL  420
FVRYCKQHAE GTWAVVDVSL DSLRPSPALR CRRRPSGCLI QEMPNGYSKV IWVEHVEVDD  480
RSVHNIYKPL VNSGLAFGAK RWVSTLDRQC ERLASVMASN IPSGDIGVIT TPEGRKSMLK  540
LAERMVISFC GGVTASTTHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP  600
VPPKRVFDFL RNESSRSEWD ILSNGGVVQE MAHIANGRDH GNCVSLLRVN SANSNQSNML  660
ILQESCTDPT GSYVIYAPVD MVAMNVVLSG GDPDYVALLP SGFAILPDGP TGMPGGGVGE  720
VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVSGE SAQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908855.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A2H3Z6W50.0A0A2H3Z6W5_PHODC; homeobox-leucine zipper protein ROC2-like
STRINGXP_008808987.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]