PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908758.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 337aa    MW: 37154.9 Da    PI: 6.9961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908758.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l + ++++G g+W++ ++  g++R++k+c++rw +yl
   XP_010908758.1 14 KGPWTPDEDKKLTEFIQKHGHGSWRLLPKFAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.91e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +vd++  lG++ W++Ia++++ gRt++++k++w+++l
   XP_010908758.1  67 RGNFSEEEEKHIVDLHSVLGNK-WSLIAARLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.546961IPR017930Myb domain
SuperFamilySSF466891.68E-3111108IPR009057Homeodomain-like
SMARTSM007176.5E-151363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001674.20E-121661No hitNo description
PROSITE profilePS5129426.19162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2665116IPR009057Homeodomain-like
SMARTSM007176.8E-1566114IPR001005SANT/Myb domain
PfamPF002496.8E-1667112IPR001005SANT/Myb domain
CDDcd001671.10E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRSPCCDEI GLKKGPWTPD EDKKLTEFIQ KHGHGSWRLL PKFAGLNRCG KSCRLRWTNY  60
LRPDIRRGNF SEEEEKHIVD LHSVLGNKWS LIAARLPGRT DNEIKNYWNT HLRKKLLRIG  120
IDPVTHMPRT DLNLLGSLSS LLADANFRNW SNLNNVLKLQ ADAALLARMQ LVQKLIQVLT  180
NAPTSNLDLT GLLGSASLGN HQLSDLLQLS RLYEGLSNSS LSVHGSIQMP SSLPNLSFQS  240
LLNNNQACTN SRLSLDGDVA ASENGTESNG FSADSFVFPT SNTTSPLLPA SPDAHTDQTQ  300
GPITLSNVSS TSAPFEAWKD LNLDDLSSDC GWKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117651.10.0transcription factor MYB53-like
SwissprotQ9S9Z21e-81MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2H3ZI961e-176A0A2H3ZI96_PHODC; transcription factor MYB41-like
STRINGXP_008778716.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-88myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]