PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908737.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 911aa    MW: 101134 Da    PI: 6.9135
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908737.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010908737.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010908737.1 218 NNQLLLGIRRA 228
                     8889****997 PP
2Auxin_resp121.65.8e-40253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010908737.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-22126227No hitNo description
PfamPF023624.5E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296127229IPR003340B3 DNA binding domain
SMARTSM010197.1E-26127229IPR003340B3 DNA binding domain
PfamPF065078.0E-35253336IPR010525Auxin response factor
SuperFamilySSF542771.83E-7770854No hitNo description
PROSITE profilePS5174521.699778862IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MRPSSSGLAN QPQEEEQRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
IDTHIPNYPS LQSQLICQLH DVTMHADAET DEVYAQMTLQ PLSLQEQKEP YHPTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSLHGGKDD DLDLSSPLRW LRDGGNPGIQ SLNFQGVGVT  420
PWLHPRIDAS MLGLQSDMYQ SMAAAALQEI RTADPTKQVS PTILPFHQPQ VTSRSSPLLL  480
SQILQQVQPQ SQQSFHHTVQ DSQVPSQTRS QFLQHQLQHC NSFDEQKQHQ QIPQQQQLLQ  540
IQQQQQHQQM QQKKHLSDHQ QIPNMVSALS QFSSASHSQS PLQKISLFSQ PQNLADSNGN  600
SVSTSSAFPL HNILQPFSPD DAPLSLPRTT PLITSSPWPS KRVALESILP SGAQFVVPHV  660
EQLGATQPNA SPHSVTLAPF PGRECSVDQD GSMDSQNNLL FGVNIDSSSL LVQNGMSNLR  720
NVVNETDSAA MPYAACKFLS SSGTDFPLNQ ALTTSSCLDK SGFLHSVENV DHMNHQSGTF  780
VKVYKSGSYG RLLDIARFSS YHELRSELGR LFGLEGRLED PVRSGWQLVF VDRENDALLV  840
GDDPWQEFVN NVDCIKILSP QEVQQMGKQG VGLLNSAPIK RLPSNSCDGY GSRQDSSNLS  900
TGITSVGSLN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908734.10.0auxin response factor 17 isoform X1
RefseqXP_029117640.10.0auxin response factor 17 isoform X1
RefseqXP_029117641.10.0auxin response factor 17 isoform X1
RefseqXP_029117642.10.0auxin response factor 17 isoform X1
RefseqXP_029117643.10.0auxin response factor 17 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2H3X3E60.0A0A2H3X3E6_PHODC; Auxin response factor
STRINGXP_008777704.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]