PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010908498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 38817.9 Da PI: 6.8467 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62 | 1.2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+Wk ++ g++R++k+c++rw +yl XP_010908498.1 14 KGPWTPEEDNKLVDYIQMHGHGNWKNLPQNAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+ l+++++ lG++ W+ Ia +++ gRt++++k++w+++l XP_010908498.1 67 RGKFSEDEERLIIHLHSVLGNK-WSMIATRLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.457 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.58E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.956 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.90E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGRSPCCDRD GVKKGPWTPE EDNKLVDYIQ MHGHGNWKNL PQNAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEDEERLIIH LHSVLGNKWS MIATRLPGRT DNEIKNYWNT HLRKKLLLMG 120 IDPVTHRPKT GLDLLAILPR LLSAAKNLGN LTTPLDNVLR LQADAANLAR FQILQSLTQL 180 MNTSPPLDTD TSSLMASASL QNYQFSDLLQ MNRQLQGLMN GSLGLPQNQI PMTSGLPGLQ 240 IPQLTNSFQA HPESSSILKE QEMVAQFNGS CSSTEHAMLS NGQSTCPVFN SSAIPTAHST 300 PSLVSTSPEH ASTAQMQDPI NSNASTPFED WEGLNLDGLD NDLSWKDILE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010908498.2 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9S9Z2 | 2e-83 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2H3ZST4 | 0.0 | A0A2H3ZST4_PHODC; transcription factor MYB53-like | ||||
STRING | XP_008796312.1 | 1e-180 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-89 | myb domain protein 9 |
Publications ? help Back to Top | |||
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