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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010908390.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 332aa MW: 37847.3 Da PI: 6.6081 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 82.7 | 3.6e-26 | 241 | 290 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
++isl dl kyF+lpi +A+k+L+v+lTvLKr+CR++GI+RWPhRkiksl
XP_010908390.1 241 ASISLTDLVKYFNLPIIEASKSLNVGLTVLKRKCREFGIPRWPHRKIKSL 290
689*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 18.053 | 225 | 311 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 1.4E-21 | 243 | 290 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 332 aa Download sequence Send to blast |
MTHEHTPTTM DSPSSSSSNN HHPHPPPSLL SFLAVFKNVL NQELIRSVHA YRVFPEEEGD 60 EREVCVEREF LFSPTSYLEI TVPIPRQLLL VDPMVADSIC HRPRFHEGQT IGLWLCILAF 120 DSAAPATSSK PPHIPPILSF SRNSRLKSVP TLSCDLQKVF QLRCEAENQE LRHVASEEIF 180 VDKENEFSQP MKNVSDYHED RVLHSCPIIK QAISENQRTD EIAPEVGASM KKKRAAAEHV 240 ASISLTDLVK YFNLPIIEAS KSLNVGLTVL KRKCREFGIP RWPHRKIKSL DTLIHNLQDE 300 LWIVIRLISN HCIQILCDLD FTTFERNFSA ES |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010908390.1 | 0.0 | protein RKD5 isoform X2 | ||||
| TrEMBL | A0A2H3ZG29 | 1e-151 | A0A2H3ZG29_PHODC; protein RKD5-like | ||||
| STRING | XP_008813317.1 | 1e-152 | (Phoenix dactylifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G35590.1 | 2e-42 | RWP-RK domain-containing protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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