PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908389.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 376aa MW: 43170.4 Da PI: 8.1947

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908389.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.4	4.3e-26	241	290	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl dl kyF+lpi +A+k+L+v+lTvLKr+CR++GI+RWPhRkiksl XP_010908389.1 241 ASISLTDLVKYFNLPIIEASKSLNVGLTVLKRKCREFGIPRWPHRKIKSL 290 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.054	225	310	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	243	290	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MTHEHTPTTM DSPSSSSSNN HHPHPPPSLL SFLAVFKNVL NQELIRSVHA YRVFPEEEGD 60 EREVCVEREF LFSPTSYLEI TVPIPRQLLL VDPMVADSIC HRPRFHEGQT IGLWLCILAF 120 DSAAPATSSK PPHIPPILSF SRNSRLKSVP TLSCDLQKVF QLRCEAENQE LRHVASEEIF 180 VDKENEFSQP MKNVSDYHED RVLHSCPIIK QAISENQRTD EIAPEVGASM KKKRAAAEHV 240 ASISLTDLVK YFNLPIIEAS KSLNVGLTVL KRKCREFGIP RWPHRKIKSL DTLIHNLQEE 300 VHRQEKEDKA AAARAATKRK RMLETEKEGI ERSPFMELQG ETKRFRQDVF KRRHKEKVLS 360 KKCQQLSLEV HNCFHN

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MTHEHTPTTM DSPSSSSSNN HHPHPPPSLL SFLAVFKNVL NQELIRSVHA YRVFPEEEGD  60
EREVCVEREF LFSPTSYLEI TVPIPRQLLL VDPMVADSIC HRPRFHEGQT IGLWLCILAF  120
DSAAPATSSK PPHIPPILSF SRNSRLKSVP TLSCDLQKVF QLRCEAENQE LRHVASEEIF  180
VDKENEFSQP MKNVSDYHED RVLHSCPIIK QAISENQRTD EIAPEVGASM KKKRAAAEHV  240
ASISLTDLVK YFNLPIIEAS KSLNVGLTVL KRKCREFGIP RWPHRKIKSL DTLIHNLQEE  300
VHRQEKEDKA AAARAATKRK RMLETEKEGI ERSPFMELQG ETKRFRQDVF KRRHKEKVLS  360
KKCQQLSLEV HNCFHN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908389.1	0.0	protein RKD5 isoform X1
TrEMBL	A0A2H3ZG29	0.0	A0A2H3ZG29_PHODC; protein RKD5-like
STRING	XP_008813317.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-55	RWP-RK domain-containing protein