PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908226.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 809aa    MW: 90359.9 Da    PI: 6.1061
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908226.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010908226.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010908226.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp119.52.6e-39254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka+  +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010908226.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79********************************87599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-42122243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-21127228No hitNo description
PROSITE profilePS5086312.379128230IPR003340B3 DNA binding domain
SMARTSM010193.1E-24128230IPR003340B3 DNA binding domain
PfamPF023621.1E-21128229IPR003340B3 DNA binding domain
PfamPF065072.9E-34254337IPR010525Auxin response factor
PfamPF023094.3E-7707798IPR033389AUX/IAA domain
SuperFamilySSF542776.38E-8708786No hitNo description
PROSITE profilePS5174524.055712796IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MKLSTVGVDQ QAQEGEEKRC LNSELWHACA GPLVCLPTVG TRVVYFPQGH SEQVAASTNR  60
DVQGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSLQEQKD TYLPIDMGVV  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVTPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSKYVKAVFH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGEKHY RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHP GAPLPHGNKE DEGSGFTWPR GDSGERGIQS LNFQSLGMGP  420
WVQKSLEPLM LGNELNLCQA ISAVGSQEIG DGDFLMQQFL QYQQPFPFPQ QSSRNNPLLQ  480
QQIFQQAPQE QIVIPQSQRA TENLAHSVSD QQLQQTHNEQ HKQQIQQPQT HAEAFQIPNN  540
HMQQQQSPLP PQLHQKSVFP DSSLNFSPVP ASSCIQGMLG SSPPDGNATI LNWSRLGNPI  600
ICEQNQQAWE PRFTMSEVPP FGSTVMLPSF AEKDTSVGSE NCSNLQNHTL YGIGKDTPSL  660
SIAVPNIGIS DTGNDLSTMP YPASCFQNSL YGYLDGSSGS LQSAAEIDRA TRTFVKVYKS  720
GSIGRLLDIT RFSSYDELRE ELGQMFGIEG LLDDPLRSGW QLVFVDREND VLLLGDDPWE  780
SFVNNVWYIK ILPPEDVLKL GKQGVESVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641335843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908226.10.0auxin response factor 12
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2H3YVJ60.0A0A2H3YVJ6_PHODC; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8