PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010907895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29540.5 Da PI: 7.9277 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81 | 2.6e-25 | 10 | 139 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 G F+ deel+ +yL +kv+g++ + +i+e+d+y +ePw+L +++++++ + F++ +++ a++ r +r + +g+W+a g+ + v + XP_010907895.1 10 TGWTFDLDDEELIEHYLVPKVRGEQKSHLCFIPELDVYATEPWNLGLEFRHGKHrdAFFCFTRVARSVASNGRLQRGAGNGTWHAGGRRTLVRC- 103 5899999******************888788**************8544443332256889999999999******99**********999999. PP NAM 96 kgelvglk.ktLvfy..kgrapkgektdWvmheyrl 128 +ge+ g k L f ++ k++ t+W+mheyrl XP_010907895.1 104 NGEVSGQKmSNLKFMlrAKKGGKAVATSWIMHEYRL 139 77777777356999854456667779********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.779 | 8 | 159 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-28 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-13 | 10 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVVPVVADLT GWTFDLDDEE LIEHYLVPKV RGEQKSHLCF IPELDVYATE PWNLGLEFRH 60 GKHRDAFFCF TRVARSVASN GRLQRGAGNG TWHAGGRRTL VRCNGEVSGQ KMSNLKFMLR 120 AKKGGKAVAT SWIMHEYRLF KPAIDDQGKE MVLYRIQKSR TGLSDDHECL DDDFSVSMAN 180 QQRWKRKRAQ MPPPGIADYE QRLGSTNMSL WEDSGNTKVN QLMYDDHAQQ PEGIMIESTT 240 SKSDQMPLIM SDNRRVPTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-16 | 11 | 139 | 18 | 140 | Stress-induced transcription factor NAC1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010907895.1 | 0.0 | NAC domain-containing protein 59-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14301 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 4e-18 | NAC domain containing protein 3 |