PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010907864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13621.5 Da PI: 6.5104 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.5 | 5.7e-12 | 37 | 75 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE++l+ +++++lG + W++Ia++++ Rt++++ s+w XP_010907864.1 37 MTQEEEDLISRLHHLLGDR-WELIAKRLP-CRTAEEVESYW 75 7****************99.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.867 | 29 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-6 | 33 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.92E-9 | 36 | 76 | No hit | No description |
Pfam | PF00249 | 5.2E-11 | 37 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-12 | 38 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.68E-8 | 38 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MLGIKIASLF SFVHCTYGEM QELDSANHGG KKQWPSMTQE EEDLISRLHH LLGDRWELIA 60 KRLPCRTAEE VESYWKIKGR GEFENNKIYK PVCTRLSPSF KFTMDEPLED TKPSQSGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010907840.1 | 2e-69 | MYB-like transcription factor ETC2 isoform X2 | ||||
Refseq | XP_019703865.2 | 4e-69 | transcription factor MYB48 isoform X1 | ||||
TrEMBL | A0A3Q0IHY7 | 3e-62 | A0A3Q0IHY7_PHODC; myb-related protein Zm38-like isoform X1 | ||||
STRING | XP_008806970.1 | 1e-53 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.3 | 3e-17 | CAPRICE-like MYB3 |