PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010907848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 120aa MW: 13891.8 Da PI: 6.9323 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.9e-12 | 38 | 77 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE++l+ +++++lG ++W++Ia++++ Rt++++ s+w XP_010907848.1 38 MTQEEEDLISRLHHLLGDNRWELIAKRLP-CRTAEEVESYW 77 7****************************.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.134 | 30 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-6 | 34 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.17E-11 | 37 | 78 | No hit | No description |
Pfam | PF00249 | 5.8E-11 | 38 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 39 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.51E-8 | 39 | 82 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MLGIKIASLF SFVHCTYGRE MQELDSANHG GKKQWPSMTQ EEEDLISRLH HLLGDNRWEL 60 IAKRLPCRTA EEVESYWKIK GRGEFENNKI YKPVCTRLSP SFKFTMDEPL EDTKPSQSGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010907840.1 | 4e-71 | MYB-like transcription factor ETC2 isoform X2 | ||||
Refseq | XP_019703865.2 | 7e-71 | transcription factor MYB48 isoform X1 | ||||
TrEMBL | A0A3Q0IHY7 | 1e-58 | A0A3Q0IHY7_PHODC; myb-related protein Zm38-like isoform X1 | ||||
STRING | XP_008806970.1 | 7e-51 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.3 | 2e-15 | CAPRICE-like MYB3 |