PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907840.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 127aa    MW: 14616.5 Da    PI: 8.4933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907840.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.3e-124584444
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +T+eE++l+ +++++lG ++W++Ia++++  Rt++++ s+w
   XP_010907840.1 45 MTQEEEDLISRLHHLLGDNRWELIAKRLP-CRTAEEVESYW 84
                     7****************************.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1343791IPR017930Myb domain
SMARTSM007174.2E-64190IPR001005SANT/Myb domain
CDDcd001677.13E-114485No hitNo description
PfamPF002496.5E-114585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-124685IPR009057Homeodomain-like
SuperFamilySSF466894.04E-84689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLSTAQSCSK PRERMKGAGN FRRAQGEMQE LDSANHGGKK QWPSMTQEEE DLISRLHHLL  60
GDNRWELIAK RLPCRTAEEV ESYWKIKGRG EFENNKIYKP VCTRLSPSFK FTMDEPLEDT  120
KPSQSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907840.16e-92MYB-like transcription factor ETC2 isoform X2
TrEMBLA0A2H3Z2694e-54A0A2H3Z269_PHODC; MYB-like transcription factor TCL2 isoform X2
STRINGXP_008806970.17e-55(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.32e-15CAPRICE-like MYB3