PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907709.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 333aa    MW: 36529.1 Da    PI: 8.6981
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907709.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.1e-32166222158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQ+++Il+RRq+Rak+e+e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  XP_010907709.1 166 DGPIYVNAKQFHGILRRRQARAKAERENKL-IKVRKPYLHESRHQHAMRRARGCGGRF 222
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-35164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.751165225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24168190IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-28168222IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MMQTAIAFKN HGGLGENYVS QPSQATLMPW WIGSQPLYGE PFGQLKSFTE EHPHGEGHLP  60
AAPRQMHHAV NPGPGPAVPE KGGDGMTKFL LFPDFKDSGK EQKAQQHSGI ISLQSCLPEH  120
QGHFELGVGQ SVVCSNYSYV GQSYSLYAPY GAQAMQGRML LPLTADGPIY VNAKQFHGIL  180
RRRQARAKAE RENKLIKVRK PYLHESRHQH AMRRARGCGG RFLSMKSEGT GQSGNINTKV  240
RDEVPAARHA TSPSSEVLQS DSGNINSASG GSSLSGSEVT SMYARENDHF QFIEHLHPSV  300
FHPLPNMMDG EHPTRIHTKW ATAADGCCDL LKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19166230266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907709.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A2H3XRS60.0A0A2H3XRS6_PHODC; nuclear transcription factor Y subunit A-10-like
STRINGXP_008787766.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-25nuclear factor Y, subunit A10