PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907708.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 698aa    MW: 80498.9 Da    PI: 8.1864
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907708.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.5e-2572161189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Y +YA++vGF vr++ks++s++++++++r+fvC++eg+++++    + k++r+r +tr gC a+++v ++++gkw+vtkl++eH+H +
  XP_010907708.1  72 EYYIAYANRVGFGVRMNKSRRSRKDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIRKDHGKWVVTKLVTEHTHMV 161
                     59****************************************9987647889999*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2372161IPR004330FAR1 DNA binding domain
PfamPF105512.3E-31262353IPR018289MULE transposase domain
PROSITE profilePS5096610.509541577IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-7547573IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-4552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MEGTLSEDDG LIRESNMDLN DNTADPHMSL ALDALGVELN NPITSQLLQL DNSDIMEPII  60
GMEFESDEAA KEYYIAYANR VGFGVRMNKS RRSRKDDTVI MRRFVCTREG FHSKRVIYDD  120
GKKKRKRGTT REGCMAMIEV IRKDHGKWVV TKLVTEHTHM VALPGKVRPR DDKAIILGNV  180
GFLHGESSGG FNNLKNFNRG IRVNPFGEGG EAQGLLEYLK RMQAENPAFF YAIQVDNNNC  240
MTNVFWADAK ARMGYQYFGD AVTFDTTYKK TKYMMPFATF RGVNHHLQSV NFGCALLMDE  300
TKGSYVWLLE TWVAAMGGQH PVSLVTDRDK AMEGAIMRVF PNTRHRFCKW HILSRCKQKL  360
SDVYLKHVTL KRDLKECINE SETIEDFETR WEYILDKYNL WDNSWLQSLY DIRRQWATVY  420
QKDTFFPELT VSRRSESLNK FFKKHFNAKT SLLVFISLFD QHLASQYEKE AQADFTTVYS  480
KPLLRTPSPM EKQAAGVYTK AVFDKFQEEF VESLGYYVDK IEDDPIIKYS VSKEEDNHRT  540
YIVCFNESDK KANCSCCKFE YCGILCRHIL RVFFIVGVRI LPEEYILKRW TRNATSNVVL  600
EERVIDPGLS FQEQLIAWYN DLCLDAVKYG MEGAISSDIY KIAKVALQKA FAEVVAAKNM  660
QRKGQQNMQI RKAAKDAIQN ASAKVATEED SWKSSTTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907708.20.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_029117407.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_029117408.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2H3XL960.0A0A2H3XL96_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008785327.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-179FAR1-related sequence 5