PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907625.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 298aa    MW: 33440.3 Da    PI: 7.3454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907625.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-103077247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+eE +l+ da + +  +   +W+ +a++++ g++  +++ ++ ++
   XP_010907625.1 30 GNWTQEENKLFEDALAHFDRDtpeRWEMVAAMIP-GKSVQDIITHYKDL 77
                     89*****************99*************.***********875 PP
2Myb_DNA-binding45.61.6e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_010907625.1 136 PWTEEEHKFFLLGLQKYGKGDWRNISRNFVLTRTPTQVASHAQKY 180
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9442787IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.8E-42876IPR009057Homeodomain-like
SMARTSM007176.0E-92880IPR001005SANT/Myb domain
SuperFamilySSF466898.28E-123086IPR009057Homeodomain-like
PfamPF002497.3E-83077IPR001005SANT/Myb domain
CDDcd001671.54E-73177No hitNo description
PROSITE profilePS5129419.229129185IPR017930Myb domain
SuperFamilySSF466892.51E-17131185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-17132183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.9E-12133179IPR009057Homeodomain-like
SMARTSM007173.4E-12133183IPR001005SANT/Myb domain
PfamPF002494.1E-12136180IPR001005SANT/Myb domain
CDDcd001677.91E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVTNSWMEVL PPTTPYFPNS SWLLGPKRSG NWTQEENKLF EDALAHFDRD TPERWEMVAA  60
MIPGKSVQDI ITHYKDLEDD VSKIESGRIP FPGYSSSSFT LDWENSHGYE GSKPSYCVGA  120
KRSGGRLDQE RKKGVPWTEE EHKFFLLGLQ KYGKGDWRNI SRNFVLTRTP TQVASHAQKY  180
FIRLSSGGKD RRRSSIHDIT TANLPSNGPP SPSQSSVLSM RSSSAVNTAI SDQFSVIVDS  240
NQPNEAASVF SPSAHGNQFM QPPYEVTSYG MKLPAQRGNL QDSMINDQNM LFQMHAHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1532971176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907625.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-98DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3XL350.0A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRINGXP_008785419.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]