PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907578.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 569aa    MW: 63919.3 Da    PI: 7.294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907578.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-12107148345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
   XP_010907578.1 107 EWNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKVQCIDHYT 148
                      6*****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250244.4E-16735564IPR016827Transcriptional adaptor 2
SMARTSM002915.7E-114489IPR000433Zinc finger, ZZ-type
PfamPF005699.1E-104688IPR000433Zinc finger, ZZ-type
SuperFamilySSF578505.42E-1548111No hitNo description
PROSITE profilePS5013510.8574891IPR000433Zinc finger, ZZ-type
CDDcd023351.18E-264896No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.57E-12101154IPR009057Homeodomain-like
PROSITE profilePS5129321.309103155IPR017884SANT domain
SMARTSM007171.1E-11104153IPR001005SANT/Myb domain
PfamPF002493.0E-12107148IPR001005SANT/Myb domain
CDDcd001674.76E-12107149No hitNo description
Gene3DG3DSA:1.10.10.601.3E-8107150IPR009057Homeodomain-like
SuperFamilySSF466891.97E-18484558IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGRSRGVPNT GDDEANQRSK RRRVASSGET LENMAAGPGA SEGKKALYHC NYCNKDISGK  60
IRIKCTKCPD FDLCVECFSV GAEVTPHKSN HPYRVMDNLS FPLICPEWNA DEEILLLEGI  120
EMYGLGNWAE VAEHVGTKSK VQCIDHYTTA YMNSPCYPLP DMSRVNGKNR KELLAMAKMQ  180
GEGKKGVSVL GDVTPKEESP FSPSRVKIED VSGEVAAGRS PSLASGASKK ASNMGQLKDG  240
SDGTKLEDPH VDRSVGVKKP KYTGDEGPSM TVLSGFNPKR QEFDPEYDND AEQALAEMEF  300
KETDTETDRE LKLRVLHIYL SRLDERKRRK EFILERNLLY PNPLEKELSS EDREIYNRYK  360
VFMRFLSPED HEALVKSVIE ERKIRRRIQE LQECRAAGCR SLAEAKAYIE QKRKRELEAS  420
AQKSKESKEG NQVVASSKVM QKTARPMNRE KGESDGSPRN TIDNHKIKGG AGLDSGSKDS  480
LFTSDDWDIT GLPGSELLSE HEQQFCCRNR LLPSHYLKMQ EKLVEEIFRG TVVKKSDAHG  540
LFKVDPVKVD RVYDIVMKKL GQHDESAPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C4e-37481635120Transcriptional adapter 2
6cw3_E4e-37481635120Transcriptional adapter 2
6cw3_G4e-37481635120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2325330RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907578.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2H3XAN20.0A0A2H3XAN2_PHODC; Transcriptional adapter
STRINGXP_008780988.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]