PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907500.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 328aa    MW: 34889.4 Da    PI: 7.1048
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907500.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.31.9e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  XP_010907500.1   4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_010907500.1  99 AVEAVLKGA 107
                     ***998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9273109IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-254102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPII QIPSETAAST  120
PVPPLKAYDI HHVSKEPGAD AAEAASTPVP PLKPYDIRHI SKDPDAVVAA AAELHRISKS  180
RPRFKRTASA KRKPGTVPVE AAEPDSARGC NPSWPRCDPV DFQRAQSHES AASQALEPAT  240
AAAVGGVEGD SQESGSVFSG ETGEASHVSQ GEPNSAEESE VGLELTLGFE PVSRAGRTAR  300
PAAESRCDVR SWEGDTRRMG LGLELLAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907500.10.0LOB domain-containing protein 41
SwissprotQ9M8864e-82LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2H3YTG80.0A0A2H3YTG8_PHODC; LOB domain-containing protein 41-like
STRINGXP_008803551.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-84LOB domain-containing protein 41