PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907326.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 367aa    MW: 40900.3 Da    PI: 8.4016
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907326.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-073170538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ + + +++++C  ++++lC+ C ++ H+       H+
  XP_010907326.1 31 ACDGCVRRQARWYCSADDVFLCQICDSSVHSPnpvarrHQ 70
                    6*****999*********************4356666666 PP
2CCT64.53.2e-22310353144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Re +++RY+eKr+tR+F KkirYe+R+ +Ae+RpR+KGrFvk+a
  XP_010907326.1 310 RESKVTRYREKRRTRLFAKKIRYEVRRLNAEKRPRMKGRFVKRA 353
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-92774IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3672774IPR000315B-box-type zinc finger
CDDcd000214.30E-103074No hitNo description
PfamPF006433.4E-63171IPR000315B-box-type zinc finger
PfamPF062035.9E-17310352IPR010402CCT domain
PROSITE profilePS5101715.755310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MIFSSRDFVT VSRSEMQQSA ASAIAGKMTR ACDGCVRRQA RWYCSADDVF LCQICDSSVH  60
SPNPVARRHQ RLRLKPATSS YSSSDVEAKT EELIFGWLKR KARTPRPHQQ AKPAQPLVPD  120
LLENSPDGNC SEEEQLLYCV PVFDPMPAEL CSPPCLNDWN SSDEDPKLVA AQLPDNAITY  180
TSPVDATGSR LVGFVPSDDE LAEFAANMES LLGKGLDNSE NPSEHGTKAE LDNGMEMATS  240
RQSMKKGEKA VSRKKVALRL DYEAIMAAWS SSPWTNGARP QFNLDVCSWP DMGMWAGEGG  300
EDKGGGRQER ESKVTRYREK RRTRLFAKKI RYEVRRLNAE KRPRMKGRFV KRASMAPTPA  360
FAGPVLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103LKRKART
2320336RRTRLFAKKIRYEVRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907326.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2H3YNL10.0A0A2H3YNL1_PHODC; zinc finger protein CONSTANS-LIKE 16 isoform X1
STRINGXP_008801158.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-69B-box type zinc finger protein with CCT domain