PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907313.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-X1
Protein Properties Length: 1105aa    MW: 118242 Da    PI: 8.0191
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907313.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.55.2e-07297315119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C + CH+G C pC+
  XP_010907313.1 297 CGRHRCDRVCHTGACSPCR 315
                     ******************6 PP
2zf-NF-X122.72.2e-07419436118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C+++CHeG+CppC
  XP_010907313.1 419 CGLHRCKETCHEGECPPC 436
                     ****************** PP
3zf-NF-X116.32.1e-05516534119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+Cq lCH G CppC 
  XP_010907313.1 516 CGQHSCQMLCHSGHCPPCL 534
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.47E-6123191No hitNo description
PROSITE patternPS013590124185IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.653124186IPR001841Zinc finger, RING-type
CDDcd060083.10E-6219280No hitNo description
SMARTSM004380.023242260IPR000967Zinc finger, NF-X1-type
PfamPF014228.3244259IPR000967Zinc finger, NF-X1-type
CDDcd060086.75E-12287335No hitNo description
SMARTSM004380.0015297316IPR000967Zinc finger, NF-X1-type
PfamPF014221.3E-5297315IPR000967Zinc finger, NF-X1-type
CDDcd060081.15E-8351394No hitNo description
SMARTSM004380.0074361380IPR000967Zinc finger, NF-X1-type
PfamPF014220.074361378IPR000967Zinc finger, NF-X1-type
CDDcd060081.39E-12409457No hitNo description
SMARTSM004384.1E-5419438IPR000967Zinc finger, NF-X1-type
PfamPF014223.6E-6419436IPR000967Zinc finger, NF-X1-type
SMARTSM00438230477496IPR000967Zinc finger, NF-X1-type
PfamPF0142218477488IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-9506558No hitNo description
SMARTSM004387.6E-4516535IPR000967Zinc finger, NF-X1-type
PfamPF014223.0E-4516533IPR000967Zinc finger, NF-X1-type
CDDcd060088.98E-5563611No hitNo description
SMARTSM004380.0045573591IPR000967Zinc finger, NF-X1-type
PfamPF014223.5573590IPR000967Zinc finger, NF-X1-type
SMARTSM004380.26626658IPR000967Zinc finger, NF-X1-type
PfamPF014220.032626641IPR000967Zinc finger, NF-X1-type
PfamPF0142217660686IPR000967Zinc finger, NF-X1-type
SMARTSM004380.19667688IPR000967Zinc finger, NF-X1-type
PfamPF014241.8E-4799864IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MMRPASSESS RPRDDRRIGN GGGLRHHHRI APSAASGNRP EWVPRGSAAA TSIHQPPPPS  60
GEPINAPGSN LGHHRHRNNQ PARPAYVPRG AAPPARLTAG ADPASVPQLV QEIQDKLARG  120
VMECMICYDM VRRSASVWSC SSCFSIFHLP CIRKWARSPT SADTVAPAAT ADGGGGGGRW  180
RCPGCQSVQA TPAQELNYTC FCGRRRDPPI DFYLTPHSCG EPCGKPLDKT PPSSTGDDDS  240
RCPHVCVLQC HPGPCPPCKA FAPRRPCPCG KKTIVRRCSD RRSPLTCGQQ CNRLLSCGRH  300
RCDRVCHTGA CSPCRVLISA SCFCKKKTEI VICGSMAVKG DVKEIDGVFS CNSICGRTLA  360
CGSHFCSENC HPGTCGECEL LPEKIKTCHC GKTELKEERE SCLDPIPTCS KLCAKLLICG  420
LHRCKETCHE GECPPCLVRV EQKCRCGSSS QTVECYKVSE ERETFVCDKP CGRKKNCGRH  480
RCSERCCPLS KPGAQLSSVD WDPHLCSMPC GKRLRCGQHS CQMLCHSGHC PPCLETIFTD  540
LTCACGKTSI PPPLPCGTPT PSCPHPCLVP QPCGHSASHT CHFGNCPPCS VPVAKECIGG  600
HVLLRNIPCG SKDIRCNQLC GKTRQCGLHA CARTCHPPPC DTSGSSVSVS GAKASCGQVC  660
GAPRRDCKHT CTAPCHPSAP CPDIRCDFPV TITCSCGRMT ASVPCGAGDG ISGFHGDTAF  720
EASIVQKLPV PLQSVEANGK KVPLGQRKLT CDEECAKQER KRDLAEAFDI TPPNLDALHF  780
GESAAASDLL ADLYRREPKW VLAVEERLKF LVLGRAKGGG AGSLRVHVFG HMLKEKRDAV  840
GHIAERWKLS VQAAGWEPKR FLVVHVTPKS RPPARILGSK PGIPVTAPHP PAFDPLIDMD  900
PRLVVAMLDL PRDADTSALV LRFGGECELV WLNDENALAV FGDPARAATA LRRLDHGSAY  960
QGAVMVLQNA GTSGPWASNA WAVGSREGGV TAKSNGPWKK AVASKSDSWG GEWSGWLTAG  1020
VSVPVWRGNE AAPVPASTNR WNVLDSDMGA NLVASESVED HGSVGVEDGM VMEPRTSGLG  1080
LAGQGAEVGK VEMPEEVDDW EAAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117298.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2H3XV920.0A0A2H3XV92_PHODC; NF-X1-type zinc finger protein NFXL1
STRINGXP_008789280.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1