PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010907204.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 484aa MW: 52435.3 Da PI: 8.7639

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907204.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010907204.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.5	0.00045	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_010907204.1 151 WKCDKCSKKYAVQSDWKAHTKIC 173 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.99E-7	74	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.7E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	116	146	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.99E-7	146	171	No hit	No description
SMART	SM00355	140	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MMKGLGIQQQ QVVEENMSNL TSASGEASVS PHQQSSFASI NPNPVKKKRS LPGNPDPAAE 60 VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE VRKKVYICPE 120 VTCVHHDPSR ALGDLTGIKK HFCRKHGEKR WKCDKCSKKY AVQSDWKAHT KICGTREYRC 180 NCGTLFSRRD SFITHRAFCD ALAEESARAI TANPMVDHHH LLCSQPTASH ELSAPNTSIQ 240 QAQFPHLLRT TEAGTSTASS QGLQDLSLKG EHQNQDFSIR PEIPPWVACQ GPGPPLDLPP 300 FIYSTMLGPE LRNENQTPHP PLYQTSAATP HLSATALLQK AAQMGATMSR NPHTGQISAT 360 RFGLGLPSHQ EMGGGGDDGL VLEDMVMASM SSAPGLGGGP FEGALGGMLG SKREGNGVEG 420 LIRSHGRIEG GVGGGGGGND GTTRDFLGLR AFSHREILSI AGLDPCMASS SFEQPQKNKA 480 PWHG

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MMKGLGIQQQ QVVEENMSNL TSASGEASVS PHQQSSFASI NPNPVKKKRS LPGNPDPAAE  60
VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE VRKKVYICPE  120
VTCVHHDPSR ALGDLTGIKK HFCRKHGEKR WKCDKCSKKY AVQSDWKAHT KICGTREYRC  180
NCGTLFSRRD SFITHRAFCD ALAEESARAI TANPMVDHHH LLCSQPTASH ELSAPNTSIQ  240
QAQFPHLLRT TEAGTSTASS QGLQDLSLKG EHQNQDFSIR PEIPPWVACQ GPGPPLDLPP  300
FIYSTMLGPE LRNENQTPHP PLYQTSAATP HLSATALLQK AAQMGATMSR NPHTGQISAT  360
RFGLGLPSHQ EMGGGGDDGL VLEDMVMASM SSAPGLGGGP FEGALGGMLG SKREGNGVEG  420
LIRSHGRIEG GVGGGGGGND GTTRDFLGLR AFSHREILSI AGLDPCMASS SFEQPQKNKA  480
PWHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	147	208	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-33	147	208	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	113	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907204.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-122	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2H3YA17	0.0	A0A2H3YA17_PHODC; protein indeterminate-domain 7-like
STRING	XP_008795411.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-119	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]