PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010907101.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 854aa MW: 98247 Da PI: 7.8092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907101.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.4	2.1e-27	93	181	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA++vGFsvr+++s++sk n+++++ +fvCs+eg+++e++ +k+r++ a+ r gCka+l+v +++d+kw+vtkl++eHnHe+ XP_010907101.1 93 FYIAYASRVGFSVRIARSRRSKCNESVIMLRFVCSREGFSREKRIIaGKKTRKRAASIREGCKAMLEVIRRSDEKWVVTKLVKEHNHEV 181 9************************************998876546788888999****************************96 PP
2	FAR1	62.7	1.1e-19	215	305	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA++vGF+ r+++s++s ++++ ++ ++vCsk+ +++ ++++ ++++ + + ++ gC+a +++ +++ + w+v+kl+leHnHel+ XP_010907101.1 215 FYYAYASRVGFEARVRQSRRSLHDESLKMLKLVCSKHRYHSGRDNNgdDNTKLQIQDPNKEGCEALFEIIRKDGDLWVVSKLVLEHNHELT 305 9*************************************9999997667777889999****************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-25	93	181	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.9E-17	215	305	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-20	407	497	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.977	684	722	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-9	687	719	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-7	697	724	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MMDGNPHGVN ELIEHHVDLE DDSINFWATL GVSPHVVEPE QHSIPPHHHM EQQPPLEMVE 60 QSVRRELFAQ EGDPRLDPFV GMEFESGEAA KTFYIAYASR VGFSVRIARS RRSKCNESVI 120 MLRFVCSREG FSREKRIIAG KKTRKRAASI REGCKAMLEV IRRSDEKWVV TKLVKEHNHE 180 VGMPSKVHYI ATEGDAVIDP YHGMEFESLE AAKTFYYAYA SRVGFEARVR QSRRSLHDES 240 LKMLKLVCSK HRYHSGRDNN GDDNTKLQIQ DPNKEGCEAL FEIIRKDGDL WVVSKLVLEH 300 NHELTCSTPS KVRCIRSQGE ILVISKNFDD TRNLLLNGQD SQYPREIQYN DLGPDDAQNL 360 LEYFKKTQVE NPAFYYAVQV GNNNCMTNIF WADAKARMAY YYFGDAVRLD TAYKNDKELM 420 PVVTFMGVNH HLQPVVFGCA LLVDESEASF VWLFENWLAA MPARHPVSLV TELNRAMAVA 480 VAKVLPNTHH CFCKKHVLFT IQQELCNLYS VQTPFEGELQ KCIDDSETRE LFESCWDAII 540 DKYGLKENTY LQSLYNIRHQ WVPIYLKEIF FAEVSVSQRC ENFDKVIEKY FTKKTPLRVA 600 VRQLRQAIAS WYETEAQADF VTLFAKPFLR TASPMEKQAA GIYTRTIFDR FQEEFVQSLG 660 YHVDKIEDGA IRRYQVLRNE DAEETCRVTF NASENKAHCS CCMFELSGVL CRHALKVFIV 720 NGVRTLPKDY ILKRWTKHAK KGSVLDDYGV ELRGNCEDPS TARYNDLCCD AVRCAREGAT 780 NIEFYKVAKD AIQKAVNEVV SAKQKRGQQT LQSFITSQKK HTRKLGKVTP KVDASNKNVK 840 RLASKRTLME HDIR

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MMDGNPHGVN ELIEHHVDLE DDSINFWATL GVSPHVVEPE QHSIPPHHHM EQQPPLEMVE  60
QSVRRELFAQ EGDPRLDPFV GMEFESGEAA KTFYIAYASR VGFSVRIARS RRSKCNESVI  120
MLRFVCSREG FSREKRIIAG KKTRKRAASI REGCKAMLEV IRRSDEKWVV TKLVKEHNHE  180
VGMPSKVHYI ATEGDAVIDP YHGMEFESLE AAKTFYYAYA SRVGFEARVR QSRRSLHDES  240
LKMLKLVCSK HRYHSGRDNN GDDNTKLQIQ DPNKEGCEAL FEIIRKDGDL WVVSKLVLEH  300
NHELTCSTPS KVRCIRSQGE ILVISKNFDD TRNLLLNGQD SQYPREIQYN DLGPDDAQNL  360
LEYFKKTQVE NPAFYYAVQV GNNNCMTNIF WADAKARMAY YYFGDAVRLD TAYKNDKELM  420
PVVTFMGVNH HLQPVVFGCA LLVDESEASF VWLFENWLAA MPARHPVSLV TELNRAMAVA  480
VAKVLPNTHH CFCKKHVLFT IQQELCNLYS VQTPFEGELQ KCIDDSETRE LFESCWDAII  540
DKYGLKENTY LQSLYNIRHQ WVPIYLKEIF FAEVSVSQRC ENFDKVIEKY FTKKTPLRVA  600
VRQLRQAIAS WYETEAQADF VTLFAKPFLR TASPMEKQAA GIYTRTIFDR FQEEFVQSLG  660
YHVDKIEDGA IRRYQVLRNE DAEETCRVTF NASENKAHCS CCMFELSGVL CRHALKVFIV  720
NGVRTLPKDY ILKRWTKHAK KGSVLDDYGV ELRGNCEDPS TARYNDLCCD AVRCAREGAT  780
NIEFYKVAKD AIQKAVNEVV SAKQKRGQQT LQSFITSQKK HTRKLGKVTP KVDASNKNVK  840
RLASKRTLME HDIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907101.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2H3XHZ4	0.0	A0A2H3XHZ4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008784021.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-149	FAR1-related sequence 5