PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906883.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 692aa    MW: 77657.4 Da    PI: 4.8838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906883.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14481527455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_010906883.1 481 NHVLAERRRREKLNEKFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 527
                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-589192IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.485477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-19479550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11481526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-14481531No hitNo description
Gene3DG3DSA:4.10.280.108.1E-19481543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-18483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.619625692IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MVAPQSTKLQ QTLQEVVQSV QWTYSLFWQL CPQQGILVWG EGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYESLS AGEANQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAFAKRR HVWLTRANEA DSKIFSRAIL AKQSARIQTV VCIPLMDGVL ELGTTEKVEE  180
DIGLIQHAKS FFMDHQDIHP KPALSEYSTS NPTACTEQQL LQTQAIQQMS VDPHGSNQEE  240
EEDDDDDADD DEDIDHNDVD DDGDEVEVGS GSEAETGRYN AGISTQLIPP SLAADEKAIP  300
ATEPSELMQL EMSEGIRLGS PDECSNDLDT ELQVLAVCHN SEQSNQQRRD DSYQAWNFLH  360
DDPCDGFPLS SATQIQELSP EDAHYSETVS TILQNNLSRW VESNSVGYLP HSQQSSFSKW  420
NSRRDHHLNV ISEGTSQWLL KNILFNIPNL HCKYKDENSP KSRDGEGGIR KGMPQEELSA  480
NHVLAERRRR EKLNEKFIIL RSLVPFVTKM DKASILGDTI EYVKQLRRHI QDLESRNSLM  540
ESEQWLKATQ IHKPGNLEGQ SVKKSSSSPQ SNTVNHIFSS QNRVASSDKR KIRVLEGGKG  600
TGKHSKAVEA PSTNVQVSII ESDALLELQC PYRDGLLLKI MQTLHELRLE ITSIRSSSAN  660
GERDPWQESR YCRSKKGNSP HILAILISNS NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2191929192Transcription factor MYC3
4rqw_B2e-2191929192Transcription factor MYC3
4rs9_A2e-2191929192Transcription factor MYC3
4yz6_A2e-2191929192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485490ERRRRE
2486491RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906881.10.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2H3XZE50.0A0A2H3XZE5_PHODC; basic helix-loop-helix protein A isoform X1
STRINGXP_008790987.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-100bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]