PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010906837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 18077.8 Da PI: 7.4674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.8 | 5e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq++++ql+ +la XP_010906837.1 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISFLQNKVSQLQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010906837.1 101 MAQAE 105 99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.889 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MGAGSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNISKM LQELPVHQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISFLQN KVSQLQMQLA MAQAEILCIQ MQQEPSISHQ 120 QLDTDDKSFL LHHNIASFPQ FMNFASSSNV VQESLKIESL WT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-50 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-50 | 2 | 107 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792173.1 | 1e-106 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-77 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2H3Y2D4 | 1e-105 | A0A2H3Y2D4_PHODC; LOB domain-containing protein 12-like | ||||
STRING | XP_008792173.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-71 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|