PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010906718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LSD | ||||||||
Protein Properties | Length: 173aa MW: 18190.1 Da PI: 8.6126 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.8 | 2.3e-15 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++VRCa+C+tV XP_010906718.1 7 CNGCRSLLLYPRGATNVRCAICNTV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 44.4 | 2.7e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA VRCa+C+t+ XP_010906718.1 46 CGGCRTLLMYTRGANGVRCACCNTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 47.8 | 2.3e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+ V XP_010906718.1 84 CGQCHTTLMYPYGAPSVKCAICHYV 108 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-15 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.7E-13 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 6.98E-6 | 20 | 107 | IPR011031 | Multihaem cytochrome |
Gene3D | G3DSA:3.90.10.10 | 4.5E-4 | 20 | 107 | No hit | No description |
TIGRFAMs | TIGR01053 | 2.1E-16 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.9E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.0E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MQSQLVCNGC RSLLLYPRGA TNVRCAICNT VTSVPPPGME MSQLVCGGCR TLLMYTRGAN 60 GVRCACCNTI NLAQSANQVS HVSCGQCHTT LMYPYGAPSV KCAICHYVTN IGASNMRVPI 120 PAAHRPNEST PMPPSTSALG SRAQTVVVEN PMTVDESGKL VSNVVVGVTT GKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019701999.1 | 1e-122 | protein LSD1 | ||||
Swissprot | Q6ASS2 | 4e-73 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A2H3YW45 | 1e-109 | A0A2H3YW45_PHODC; protein LSD1-like | ||||
STRING | XP_008804686.1 | 1e-110 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-67 | LSD family protein |
Publications ? help Back to Top | |||
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