PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010906413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 285aa MW: 31462.6 Da PI: 4.9626 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.1 | 4.8e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v + ++fdfl div + XP_010906413.1 6 DTRFPASRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYGITLQRGMKTMSALHLKQCVHSFNVFDFLKDIVSK 86 5789**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-24 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.91E-20 | 3 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-17 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YGITLQRGMK 60 TMSALHLKQC VHSFNVFDFL KDIVSKVPDM GSSDPGGDDR SAKRRKAAED DNDSEEDLKR 120 KAHEAAGHSS GGRGWGRGRG RGRGARGVHG VDRDGAHYDK YEDDPGTSPQ HSDRPPHMKS 180 EIMDDSLSAR ESKETTVSNS NTGAAVRNFD LNLDLDENGD TSTATASATA TATATSFETD 240 HEMKHEECPG WSLADMDKMA IDPIQFALSN RRLDEEEEDY DNEES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-22 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 141 | RGWGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010906413.1 | 0.0 | dr1-associated corepressor isoform X2 | ||||
TrEMBL | A0A2H3XTP2 | 1e-149 | A0A2H3XTP2_PHODC; dr1-associated corepressor | ||||
STRING | XP_008788562.1 | 1e-150 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-53 | nuclear factor Y, subunit C11 |