PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906239.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 271aa    MW: 30780.4 Da    PI: 5.0815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906239.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.6e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++ +G + W+t +++ g++R++k+c++rw++yl
   XP_010906239.1 18 KGAWTAEEDQKLVDYIRTHGDKKWRTLPAKAGLNRCGKSCRLRWLNYL 65
                     79********************************************97 PP
2Myb_DNA-binding53.84.5e-1771116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_010906239.1  71 RGNISEDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 116
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5741365IPR017930Myb domain
SuperFamilySSF466892.68E-2917112IPR009057Homeodomain-like
SMARTSM007172.1E-141767IPR001005SANT/Myb domain
PfamPF002491.5E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-241972IPR009057Homeodomain-like
CDDcd001676.17E-112065No hitNo description
PROSITE profilePS5129425.74966120IPR017930Myb domain
SMARTSM007172.5E-1670118IPR001005SANT/Myb domain
PfamPF002491.6E-1571116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2473119IPR009057Homeodomain-like
CDDcd001675.15E-1275116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVKKTERVGK KGVVMVNKGA WTAEEDQKLV DYIRTHGDKK WRTLPAKAGL NRCGKSCRLR  60
WLNYLRPGIK RGNISEDEED LIIRLHNLLG NRWSLIAGRL PGRTDNEIKN HWNTHLSKQT  120
LTIDDLNLKL NTKHEGVHGH SHPSNNPLGP MQGFKPTISE EHFEAWLPEN NDELVSSWVD  180
LPVSEFDVEQ LFDFTSMLDV EGNEGGSSGS ELGVEDYGMT HQDGCQEPIK NDLCGVNSQG  240
SLDPQAMCNP LEFDDFDQFI GCQDYELYFF H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121221110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906239.10.0transcription repressor MYB5-like
TrEMBLA0A2H3X6211e-158A0A2H3X621_PHODC; transcription factor WER-like
STRINGXP_008778866.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17778510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-54MYB family protein