PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906107.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 356aa    MW: 38985.7 Da    PI: 9.992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906107.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_010906107.1  5 KQKWTAEEEAALKAGVVKHGAGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 55
                     79***********************************66**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.424161IPR017930Myb domain
SuperFamilySSF466894.04E-15271IPR009057Homeodomain-like
SMARTSM007173.1E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-13456IPR009057Homeodomain-like
PfamPF002499.2E-8555IPR001005SANT/Myb domain
CDDcd116601.30E-17656No hitNo description
SMARTSM005263.2E-14117184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.68E-16121194IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-15121196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.934121189IPR005818Linker histone H1/H5, domain H15
PfamPF005382.6E-9125193IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNISVTA  60
SGWGSREKAR IALKKSKQVS NHDHNPMALS TIVKDVNDEI VNAKPLAVSS ESLRIAGPKG  120
SNSRLENLIL EAITTLEEPT GSNKTSIAMY IEDQYWPPPD FKRLLSAKLK ALTASGTLIK  180
VKRKYRIAPS SSFSVGKSSN LSLRDGKHRE CSRLEKDDIK PLTKSQVDAE LARMRNMTAQ  240
EAAAAAAQAV AEAEAAMAEA EKAAREAEAA EADAEAAQAF AEAAMLMLKN RNAAKMFLRD  300
TLGRILLHKD MYWSCIGTST LSVQVNVKWI GQLFPQGSRT YTTSMVIPID YQGELK
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906107.20.0single myb histone 5 isoform X1
RefseqXP_029117063.10.0single myb histone 5 isoform X1
RefseqXP_029117064.10.0single myb histone 5 isoform X1
SwissprotC0HIA33e-93SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2H3X3R41e-159A0A2H3X3R4_PHODC; single myb histone 6-like
STRINGXP_008777844.11e-159(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-80telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]