PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 24691.2 Da PI: 5.4864 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.9 | 1.2e-16 | 94 | 147 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++++ q Lee+F+kn+ + +e+eeLA+kl++ rqV vW+qN++ ++k XP_010905884.1 94 KKLRLSPAQALLLEEAFKKNPILESTEKEELAAKLDILPRQVEVWYQNHKVRMK 147 667899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 83.7 | 2.7e-27 | 94 | 181 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rls q+ lLEe F+++ Le+++K+ela +L++ prqv+vW+qn++ R+k++q+E++ + Lk++++ l een rL++e e+Lr + XP_010905884.1 94 KKLRLSPAQALLLEEAFKKNPILESTEKEELAAKLDILPRQVEVWYQNHKVRMKARQMETENACLKQQCQLLIEENIRLRREIERLR-A 181 9*************************************************************************************9.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.18E-15 | 80 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.592 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-11 | 91 | 153 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-15 | 91 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.78E-11 | 94 | 152 | No hit | No description |
Pfam | PF00046 | 7.4E-14 | 94 | 147 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.4E-5 | 149 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEVADEVSVV GDSRHMAELK LQKRQQPSSG IRSEVEQYMV AAKVEAGKFE ITESVQREEN 60 SGHNMRDIDI NQPAPEAVEE PINNDMVKEG TKPKKLRLSP AQALLLEEAF KKNPILESTE 120 KEELAAKLDI LPRQVEVWYQ NHKVRMKARQ METENACLKQ QCQLLIEENI RLRREIERLR 180 ALEMPPPNST VTMCLGAGSV APMPGASNTN LQPQPPSTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905884.1 | 1e-160 | homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 3e-28 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-28 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | M0U975 | 2e-28 | M0U975_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP14660_001 | 3e-29 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-17 | homeobox from Arabidopsis thaliana |