PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905710.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 253aa    MW: 29339.1 Da    PI: 6.0668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905710.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_010905710.1 10 KGPWTEQEDQQLVCFVGLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding56.18.3e-1863108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_010905710.1  63 RGRMTPQEERLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.378557IPR017930Myb domain
SuperFamilySSF466895.29E-309104IPR009057Homeodomain-like
SMARTSM007172.5E-16959IPR001005SANT/Myb domain
PfamPF002491.7E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-201164IPR009057Homeodomain-like
CDDcd001674.10E-111257No hitNo description
PROSITE profilePS5129426.65258112IPR017930Myb domain
SMARTSM007179.7E-1762110IPR001005SANT/Myb domain
PfamPF002498.5E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2465111IPR009057Homeodomain-like
CDDcd001674.01E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVTVKEETRK GPWTEQEDQQ LVCFVGLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTPQE ERLILELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKREAI  120
SPSSSSSSLT YQSPSLSEPP SEVGLERQHE LNKAGGCCCM TAGLDEEEEG AKGYYSMDQI  180
WNELATTPEA ISGLSLEECK VEVCDTSWPP MPSPIWEYSS EPLWKMDDEE FKMFPPVDDL  240
LVSNYQHGRE FCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-29101124105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-291011258159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-291011258159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-29101124105C-Myb DNA-Binding Domain
1msf_C2e-29101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905710.10.0myb-related protein MYBAS2 isoform X1
SwissprotQ4JL843e-84MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A2H3X0991e-153A0A2H3X099_PHODC; myb-related protein MYBAS2-like
STRINGXP_008776389.11e-154(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.35e-84myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]