PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905494.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CAMTA
Protein Properties Length: 1073aa    MW: 119980 Da    PI: 6.2819
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905494.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.61.3e-54111272117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk++e++ iL+n+e++ lt+e+++rp+sgsl+L+nr+++r+frkDG+ w++kkdg+tv E+he+LKvg+v+vl+cyYah+e+np fq
  XP_010905494.1  11 QQEaHTRWLKPSEVLFILQNYERFPLTQEPPQRPPSGSLFLFNRRILRFFRKDGHLWRRKKDGRTVGEAHERLKVGNVDVLNCYYAHGEKNPYFQ 105
                     566699***************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr++w+L+ ++e+ivlvhy+ev
  XP_010905494.1 106 RRSFWMLDPAYEHIVLVHYREV 127
                     ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.5237133IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7310128IPR005559CG-1 DNA-binding domain
PfamPF038595.1E-4813126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.8E-7502589IPR013783Immunoglobulin-like fold
CDDcd001023.95E-5505589No hitNo description
SuperFamilySSF812961.2E-16506589IPR014756Immunoglobulin E-set
PfamPF018334.8E-8506581IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.0E-13701795IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.743703795IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-14704797IPR020683Ankyrin repeat-containing domain
CDDcd002043.77E-8708795No hitNo description
PfamPF127963.4E-6719796IPR020683Ankyrin repeat-containing domain
SMARTSM002483.4E-4736765IPR002110Ankyrin repeat
PROSITE profilePS5008811.007736768IPR002110Ankyrin repeat
SMARTSM0001517857879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187858887IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-7859968IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.1915937IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.986917945IPR000048IQ motif, EF-hand binding site
PfamPF006120.011918936IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0049938960IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.694939967IPR000048IQ motif, EF-hand binding site
PfamPF006125.1E-4942960IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
MQHVYDINVL QQEAHTRWLK PSEVLFILQN YERFPLTQEP PQRPPSGSLF LFNRRILRFF  60
RKDGHLWRRK KDGRTVGEAH ERLKVGNVDV LNCYYAHGEK NPYFQRRSFW MLDPAYEHIV  120
LVHYREVAEG RYVSGSTSNL STESCSTFNQ STSVNNAQIQ GFTSGTNDLY EPYRSSCSPG  180
SVEEVSSKFV IENLESDRMN MMYKSLNDGQ SSRPEVSQAL RKLAEQLSLD DDDNSIFFDD  240
LPAFAGQNEN LQDLDFGTRD SLQESHEHLL RGLEFAGQGQ LEEARKQKNY NNIQSLKTCG  300
DHGTQQDQSL CLDYGIERKQ SPSWKDMLEL SSSSAGVDSH VKTSNCSTRA FGLASPARNM  360
FDHDALLSSS ASIGMSAIPF EESEDLTWLK TESRPNGNQI SESDLSLQLS ATRRFLLGSD  420
YPVGSSTSSS QLSDAGVHSS GTSIVEANIL LRKENSTDWM GTEHLAAGNN TYTPDFSGSW  480
FDHGQFESSV GMYSSLTVAQ KQRFSIHEIC PEWAFAYEST KVIITGNFLC NPSDCAWAVM  540
FGDIEVPLEI VQDGVLRCQA PQHSPGKVTF CITSGNRESC SEVREFEFRA MAKTSSSKGI  600
SSSTDATKSA EELSLLARLV QILLCGHDSL TVSKGAVAEV GRSRKLKTDD PWKQIIESLQ  660
VGCENSLGTV EWIMQELLKD KLQHWISSKN QRNDGTSCLL SKQEQGIIHL ISGLGYEWAL  720
NPILGAGVGI NFRDANGWTA LHWAAYFGRE NMVAELLAAG ASAGAVTDPT PQDPVGKTPG  780
FIASAKGHKG LAGYLSEVAL TSHLSSLTME ENEISKGSAE LEAERAVESI SQRSVQIHVG  840
GAEDELSLKD SLAAVRNAAQ AAARIQAAFR AHSFRKRQQK AALSQDDYGM TQEEIQGLSA  900
AAKTHRLFHG FHDQKFDKAA LSIQKKYRGW KGRKDFLTLR QHVVKIQAHV RGHQVRRKYR  960
EILRAVSVVE KVVLRWRRRG AGLRGFRAER ELSNNEEEEE DVAKDFRKQK VDAALDEAMS  1020
RVLSMVDSPD ARQQYRRMLE RYRQAMAESS NADEATSRLR DDFEIIENDD FMN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905494.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2H3Z2H70.0A0A2H3Z2H7_PHODC; calmodulin-binding transcription activator 4-like
STRINGXP_008807442.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-159Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]