PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905433.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 272aa    MW: 29946.5 Da    PI: 10.0163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905433.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.44.9e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l  +v ++G g W+tI +          R+  ++k++w++
   XP_010905433.1  5 KQKWTAEEEAALRAGVVKHGAGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 55
                     79***********************************66**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.902161IPR017930Myb domain
SuperFamilySSF466897.4E-16282IPR009057Homeodomain-like
SMARTSM007172.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-13456IPR009057Homeodomain-like
PfamPF002495.3E-8555IPR001005SANT/Myb domain
CDDcd116608.13E-18656No hitNo description
SuperFamilySSF467859.25E-7119157IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-6121157IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV VKHGAGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMSVTA  60
NGWGSREKAR IALKKSRQIS KYDDIPKVLS TEVQDIDDEI VDSKPLSMSS ESLKISGSKR  120
SISRLDDLIM EAITNLKEPT GSNKTAIAMF IEVKRKYRIA PISPFSERRN SKTLLLEGRK  180
MGPSKLERDD IKILTKAQVD AELARMRNMT AEEAAAVAAK AVSEAEAAIK EAEEAAREAE  240
AAEADAEAAK AFAEAAMLTL KNRNAAKMMV RV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116911.10.0single myb histone 5 isoform X2
SwissprotC0HIA39e-81SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2H3XJM01e-141A0A2H3XJM0_PHODC; single myb histone 6-like
STRINGXP_008784788.11e-142(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-66telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]