PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905432.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 300aa    MW: 33243.5 Da    PI: 10.2297
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905432.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l  +v ++G g W+tI +          R+  ++k++w++
   XP_010905432.1  5 KQKWTAEEEAALRAGVVKHGAGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 55
                     79***********************************66**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.902161IPR017930Myb domain
SuperFamilySSF466898.97E-16282IPR009057Homeodomain-like
SMARTSM007172.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-13456IPR009057Homeodomain-like
PfamPF002496.2E-8555IPR001005SANT/Myb domain
CDDcd116601.52E-17656No hitNo description
SuperFamilySSF467852.18E-16119197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.5E-16119184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.214121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.6E-15122189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-8126182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV VKHGAGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMSVTA  60
NGWGSREKAR IALKKSRQIS KYDDIPKVLS TEVQDIDDEI VDSKPLSMSS ESLKISGSKR  120
SISRLDDLIM EAITNLKEPT GSNKTAIAMF IEEQYWLPPD FKQLLSAKLK ALTVSRKLIK  180
VKRKYRIAPI SPFSERRNSK TLLLEGRKMG PSKLERDDIK ILTKAQVDAE LARMRNMTAE  240
EAAAVAAKAV SEAEAAIKEA EEAAREAEAA EADAEAAKAF AEAAMLTLKN RNAAKMMVRV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905432.10.0single myb histone 6 isoform X3
SwissprotC0HIA31e-101SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2H3XJM01e-168A0A2H3XJM0_PHODC; single myb histone 6-like
STRINGXP_008784788.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-85telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]