PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905421.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 855aa    MW: 93460.4 Da    PI: 6.6113
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905421.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010905421.1 26 YVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 83
                    6789****************************************************97 PP
2START168.74e-531743812204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g ++l+
  XP_010905421.1 174 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLTVIPTGngGNIELI 267
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p     s++vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_010905421.1 268 YMQTYAPTTLASaRDFWTLRYTTGLEDGSLVICERSLTPSTGGPAgppASNFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLY 362
                     ***************************************999998888*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s  + ++k++ a+l++ +
  XP_010905421.1 363 ESPKILAQKMTIAALRHIR 381
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-18983IPR009057Homeodomain-like
PROSITE profilePS5007115.3372084IPR001356Homeobox domain
SMARTSM003892.3E-152288IPR001356Homeobox domain
CDDcd000861.36E-162585No hitNo description
SuperFamilySSF466891.28E-162587IPR009057Homeodomain-like
PfamPF000463.5E-162683IPR001356Homeobox domain
CDDcd146861.81E-677116No hitNo description
PROSITE profilePS5084826.098164392IPR002913START domain
CDDcd088752.37E-69168384No hitNo description
Gene3DG3DSA:3.30.530.207.7E-24172372IPR023393START-like domain
SMARTSM002343.9E-48173383IPR002913START domain
PfamPF018526.5E-51174381IPR002913START domain
SuperFamilySSF559611.65E-39174385No hitNo description
SuperFamilySSF559611.0E-4418503No hitNo description
SuperFamilySSF559611.0E-4536610No hitNo description
PfamPF086707.0E-52711854IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAMVAAGQGA GKEAGKTQQG IDAGKYVRYT PEQVEALERV YSECPKPSSM RRQQLIRECP  60
ILANIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY  120
ENGYMRQQLH TASVATTDTS CESVVTSGQH HHQQNPTPQH PQRDANNPAG LLAIAEETLA  180
EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP TKVAEILKDR  240
PSWYRDCRCL DVLTVIPTGN GGNIELIYMQ TYAPTTLASA RDFWTLRYTT GLEDGSLVIC  300
ERSLTPSTGG PAGPPASNFV RAEMLPSGYL IRPCEGGGSM IHIVDHIDLD AWSVPEVLRP  360
LYESPKILAQ KMTIAALRHI RQIAQETSGE ISYGGGRQPA VLRTFSQRLS RGFNDAVNGF  420
TDDGWSLMGS DGVEDVTITI NSSPNKLLGS HVNSSTMFSA MGGGILCAKA SMLLQNVPPA  480
LLVRFLREHR SEWADCGVDA YSAASLRASP YAVPGVRASS GFLGGQVILP LAHTIEHEEF  540
LEVIRLEGHG FNQEEVVLSR DMYLLQLCSG VDENAVGACA QLVFAPIDES FADDAPLLPS  600
GFRVIPLDPK TDSPTVNRTL DLASTLEVGS GAAARSSGEN SSNTYNLRSV LTIAFQFTYE  660
NHLQESVAAM ARQYVRSVVA SVQRVAMAIA PSRLGSQIGM KHHPGSPEAH TLARWISRSY  720
RFHIGVDLLR ADSQAGSDSL LKLLWHHSDA ILCCSLKSSP VFTFANQAGL DMLETTFIAL  780
QDITLEKILD DSGRKVLCSE FTKIMQQGFA YLPAGICLSS MGRPVSYEQA VAWKVLNEED  840
SHHCLAFMFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905421.10.0homeobox-leucine zipper protein HOX32 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2H3Y7760.0A0A2H3Y776_PHODC; homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]