PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 293aa    MW: 32797.6 Da    PI: 8.6001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905362.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-103077247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g WT+eE +++ da +   g+   +W+++a++++ g++  ++ s++ ++
   XP_010905362.1 30 GGWTQEENKRFEDALAHIDGDtpnRWEKVAAMIP-GKSVWDIMSHYKDL 77
                     67********************************.***********875 PP

2Myb_DNA-binding42.12e-13139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+++++ + +++G+g+W+ I+r +   Rt+ q+ s+ qky
   XP_010905362.1 139 PWSEEEHKRFLLGLQKYGKGDWRNISRNFVISRTPTQVASHAQKY 183
                      8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.5252780IPR017884SANT domain
SMARTSM007174.2E-82880IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-42876IPR009057Homeodomain-like
PfamPF002498.0E-83077IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-113084IPR009057Homeodomain-like
CDDcd001672.40E-73277No hitNo description
PROSITE profilePS5129417.554132188IPR017930Myb domain
SuperFamilySSF466891.15E-16134188IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-18135186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.0E-12136182IPR009057Homeodomain-like
SMARTSM007179.8E-12136186IPR001005SANT/Myb domain
PfamPF002499.2E-12139183IPR001005SANT/Myb domain
CDDcd001674.64E-10139184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSSSSWMEVL PPTSPCFSSS SWFLGQKRSG GWTQEENKRF EDALAHIDGD TPNRWEKVAA  60
MIPGKSVWDI MSHYKDLEDD VSEIEAGRIP FPVYSCSPSS FTLDWANHHG YEGLRPAYCV  120
AGGRRSGGRP DQERKKGVPW SEEEHKRFLL GLQKYGKGDW RNISRNFVIS RTPTQVASHA  180
QKYFIRLNSG GKDKRRSSIH DITTVDFPNN TPPSPSRPSV LSMQSSSAAA TGLPDLFSEM  240
VDSKQPNEAF NSSANGNQFM HPPSYGMKLQ AQNTLQDLTV GSCRMLYQMH SRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-13321041183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905362.10.0transcription factor DIVARICATA
SwissprotQ8S9H74e-96DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3XL351e-152A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRINGXP_008785419.11e-153(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-84Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]