PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 32797.6 Da PI: 8.6001 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5e-10 | 30 | 77 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g WT+eE +++ da + g+ +W+++a++++ g++ ++ s++ ++ XP_010905362.1 30 GGWTQEENKRFEDALAHIDGDtpnRWEKVAAMIP-GKSVWDIMSHYKDL 77 67********************************.***********875 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 2e-13 | 139 | 183 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+++++ + +++G+g+W+ I+r + Rt+ q+ s+ qky XP_010905362.1 139 PWSEEEHKRFLLGLQKYGKGDWRNISRNFVISRTPTQVASHAQKY 183 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.525 | 27 | 80 | IPR017884 | SANT domain |
SMART | SM00717 | 4.2E-8 | 28 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-4 | 28 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-8 | 30 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-11 | 30 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-7 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 17.554 | 132 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-16 | 134 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-18 | 135 | 186 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.0E-12 | 136 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-12 | 136 | 186 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-12 | 139 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.64E-10 | 139 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSSSSWMEVL PPTSPCFSSS SWFLGQKRSG GWTQEENKRF EDALAHIDGD TPNRWEKVAA 60 MIPGKSVWDI MSHYKDLEDD VSEIEAGRIP FPVYSCSPSS FTLDWANHHG YEGLRPAYCV 120 AGGRRSGGRP DQERKKGVPW SEEEHKRFLL GLQKYGKGDW RNISRNFVIS RTPTQVASHA 180 QKYFIRLNSG GKDKRRSSIH DITTVDFPNN TPPSPSRPSV LSMQSSSAAA TGLPDLFSEM 240 VDSKQPNEAF NSSANGNQFM HPPSYGMKLQ AQNTLQDLTV GSCRMLYQMH SRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 32 | 104 | 11 | 83 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905362.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 4e-96 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2H3XL35 | 1e-152 | A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1 | ||||
STRING | XP_008785419.1 | 1e-153 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-84 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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