PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905324.1 | ||||||||
Common Name | GLO2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24188 Da PI: 10.0252 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.6 | 1.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA E+SvLCda+v+++ifss+gk+ ey+s XP_010905324.1 9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDAQVSLVIFSSSGKMSEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 72.3 | 1.4e-24 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq +sgk+l++ k+e+l+ e++++kke++n+q e+Rhl+G dL+sL+ keL +e+ L+++l+++R k++++l++ ++ + e+e+++ + L+ XP_010905324.1 71 YQVNSGKKLWDVKHENLSVEIDRIKKENDNMQIELRHLKGGDLNSLNPKELILIEDVLQNGLTSVRGKQMDFLKKLKKNERLLEEENKHLTFLLH 165 6788999*****************************************************************99888888888888888777777 PP K-box 96 kk 97 ++ XP_010905324.1 166 HQ 167 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.576 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-36 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.40E-41 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.9E-17 | 83 | 161 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.019 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD AQVSLVIFSS SGKMSEYCSP 60 STTLSRLLEK YQVNSGKKLW DVKHENLSVE IDRIKKENDN MQIELRHLKG GDLNSLNPKE 120 LILIEDVLQN GLTSVRGKQM DFLKKLKKNE RLLEEENKHL TFLLHHQELA MNGNVRELEL 180 GDPLKARDFA CQIPIAFRVQ PIQPNLQENK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905324.1 | 1e-152 | MADS-box transcription factor 2 isoform X2 | ||||
Swissprot | Q0HA25 | 1e-105 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | Q5K6A0 | 1e-151 | Q5K6A0_ELAGV; MADS box transcription factor | ||||
STRING | XP_008805865.1 | 1e-129 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-78 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105032555 |
Publications ? help Back to Top | |||
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