PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 22938.1 Da PI: 8.1506 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97 | 1.9e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+p++ p +q +++ +v+k+FG++ ++++++a++e++r+++++sl++eA+ r+ +Pv+Ga+g++++++++l+q+ XP_010905292.1 2 SCNGCRVLRKGCSETCILRPCLqwiesPVAQGHATVFVAKFFGRAGLMSFISAVSESQRPALFQSLLFEACGRTINPVNGAAGLLWSGNWHLCQA 96 6**********************999999****************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_010905292.1 97 AVETVLR 103 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.429 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLQWIESPV AQGHATVFVA KFFGRAGLMS FISAVSESQR 60 PALFQSLLFE ACGRTINPVN GAAGLLWSGN WHLCQAAVET VLRGGTLKPL PELDPAAADH 120 GAVAAGVGGE GGFLYGRPRA GGWSPSSEAK RRKASAAADD DLAAPQCDLD LCLTPGSPAA 180 VRVQERRRPA TPSMTSEGSV TTSGESGGDR QPRLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905292.1 | 1e-158 | LOW QUALITY PROTEIN: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 4e-73 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2H3XQ70 | 1e-120 | A0A2H3XQ70_PHODC; LOB domain-containing protein 37 | ||||
STRING | XP_008787166.1 | 1e-121 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 9e-72 | LOB domain-containing protein 38 |