PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905133.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 499aa    MW: 56238.2 Da    PI: 8.4879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905133.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l d++ ++G g+W+t++++ g+ R +k+c++rw +yl
   XP_010905133.1 15 KGLWSPDEDQKLRDYILKHGHGCWSTVPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding50.54.8e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+   +++++ lG++ W+ Ia +++ gRt++++k++w++yl
   XP_010905133.1  68 RGFFSAEEEATVIKLHAILGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113
                      789*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0121062IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-211164IPR009057Homeodomain-like
SuperFamilySSF466895.87E-2812109IPR009057Homeodomain-like
SMARTSM007171.8E-111464IPR001005SANT/Myb domain
PfamPF002496.9E-141562IPR001005SANT/Myb domain
CDDcd001675.11E-101862No hitNo description
PROSITE profilePS5129426.4163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2565118IPR009057Homeodomain-like
SMARTSM007173.7E-1667115IPR001005SANT/Myb domain
PfamPF002496.4E-1469113IPR001005SANT/Myb domain
CDDcd001678.16E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGCKTCEKPK VSHRKGLWSP DEDQKLRDYI LKHGHGCWST VPAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGF FSAEEEATVI KLHAILGNKW SQIAMHLPGR TDNEVKNYWN SYLKKKVVKL  120
GGSNSHASPT KSQDSVNQSP ETRQIPEEEN KQIPGSDSLE PLEPPMQSSM DHDSFKGTLL  180
PPFPKVLFAD WLSMDHPTNQ SLLNSDAEMN CQWDSNSNAD LFKYGSFQAD GPSSSDFLHG  240
FGDSSFCGEF QLQFEHGDQL LGGAFCNYLS MDENGDSPLH PRSFPKSTLT PSSILLLPLL  300
LLWRHHRRSP SSSGLIADSL PPLSASPPLH HAPPPLHTST SFFWGLIRRS SARNQICVAG  360
HRSSSCRVRG RRTAFYRLSL AFFLTSSKTL TIDRLPVVLG ALELVGIGHT GMDEHERKSG  420
QMEFYKMTHI HRDGHFVTDE SRDIFGELHL LLLSVSASPQ YLWRSVMSRL RLLMVPAMVE  480
LMMIMLLWMT DSSMPLYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701827.10.0transcription factor LAF1-like
TrEMBLA0A2H3Y7D91e-168A0A2H3Y7D9_PHODC; transcription factor LAF1-like
STRINGXP_008794566.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-57myb domain protein 18