PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010905085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24003.2 Da PI: 9.1964 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 49 | 103 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+++++++q++ Le F k+r++ ++ +LA +lgL+ +qV vWFqNrRa++k+ XP_010905085.1 49 KKRRLSDQQVKFLEMSFGKERKLESGRKVHLAGELGLDPKQVAVWFQNRRARYKN 103 56689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.6 | 3.4e-38 | 49 | 140 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++qvk+LE+sF +e+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k+lE++y +Lk+a+da++ e+++Le+ev +L+e+l+e XP_010905085.1 49 KKRRLSDQQVKFLEMSFGKERKLESGRKVHLAGELGLDPKQVAVWFQNRRARYKNKHLEEEYLKLKSAHDAVVVEKCHLENEVLKLKEKLTE 140 9***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.066 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-16 | 47 | 108 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-16 | 48 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 49 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-15 | 49 | 103 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.18E-14 | 49 | 105 | No hit | No description |
PRINTS | PR00031 | 3.1E-5 | 75 | 84 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 84 | 100 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MIKTIPSHLE EERSSLMSFG LYSQKIEGET RTRRRRRKTK VDGAGGEAKK RRLSDQQVKF 60 LEMSFGKERK LESGRKVHLA GELGLDPKQV AVWFQNRRAR YKNKHLEEEY LKLKSAHDAV 120 VVEKCHLENE VLKLKEKLTE AEVSIRKLSE AVNGASGGSG GDGGGSPTSS FSTVTYHPLV 180 GEFGVNGEAD LIYIPEYNFN NYMMEWDDLY GM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 51 | RRRRKTKVDGAGGEAKKRR |
2 | 34 | 39 | RRRKTK |
3 | 35 | 51 | RRKTKVDGAGGEAKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905085.1 | 1e-155 | homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q7XI85 | 8e-58 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A2H3Y9T6 | 4e-96 | A0A2H3Y9T6_PHODC; homeobox-leucine zipper protein HOX12-like | ||||
STRING | XP_008795628.1 | 7e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-37 | homeobox protein 40 |
Publications ? help Back to Top | |||
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