PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905080.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 553aa    MW: 59275.6 Da    PI: 6.1721
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905080.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.58.6e-751715523374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     elLl++A  ++s+d + a+++Larl++   +++g+p+qR+a++f+eAL a l    +      +  + s  + +++++a+k+fs+ sP+++f+ +
  XP_010905080.1 171 ELLLQAALSIESSDIQTAHTILARLNQYlPASAGSPLQRAAFHFKEALLALLPL--PDR--PAAEPPLSAVEIVRRISAHKAFSDFSPVPQFASF 261
                     79*************************9899999****************9987..222..223333334569********************** PP

            GRAS  97 taNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     taNq +l+a++ +         + vH iDf+i+ G+QW ++ q+ asR+    ++pp lRiT+v++   +++ e+   +e+L++fA+ lgv++  
  XP_010905080.1 262 TANQILLDALDAAnaaagggghRSVHLIDFEIGLGGQWSSFAQEVASRSraarAPPPGLRITAVVP---EETGETALAAENLRDFARGLGVRLTV 353
                     *********998777777777799************************988888899*********...4688899999**************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.....sFlerflealeyysal 267
                     +++ +  l +l l+ +r+ pgE +aV l  +++rll   ++ ++   ++L++v++ sP+vvv+v+ e ++ ++      s+ + ++  +e+y+a+
  XP_010905080.1 354 DFIRVGGLGTLALNGIRLAPGEPVAVVLTPAIFRLL---GAAPESSASLLRFVRRASPRVVVFVDTEWSYfGDCaghppSLRRTVAGGIEHYAAV 445
                     **9999******************************...444445679*******************77754435566699999*********** PP

            GRAS 268 fdsleak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                     ++s+ea        ++ +e+ + vEr +++++i ++v   g++   r  + + Wre++  aG  pv +se+a++qa+ l+r  ++dgy+v  ++g
  XP_010905080.1 446 LESVEAAavvsgaTGPVEETVRRVERTVVRPRIFSAV---GSW---RSGRGGGWREAFAGAGIAPVGFSEFAESQAEWLVRGAQVDGYHVARREG 534
                     ****766444443334448889999999999999888...556...455788******************************************* PP

            GRAS 357 slvlgWkdrpLvsvSaWr 374
                     s+vl W++r+L s+SaWr
  XP_010905080.1 535 SMVLSWRGRELASTSAWR 552
                     *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.193143532IPR005202Transcription factor GRAS
PfamPF035143.0E-72171552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKPSKVLTDS PQSQTTLQYS IPPKPLDSNP SSNGSHFPTN LFYEPTSVLD PHLSSSPAAA  60
ATTGGPDLAH LPWDSHNHQH HHLLHPPPQP PPSEEWDLTS WFLAEKDDLS PFPKAPHHSQ  120
FHFPEDDNPS NASLFDGPFD LPDSFEPLPP FSDTAVAVVS PPPAFDRTQL ELLLQAALSI  180
ESSDIQTAHT ILARLNQYLP ASAGSPLQRA AFHFKEALLA LLPLPDRPAA EPPLSAVEIV  240
RRISAHKAFS DFSPVPQFAS FTANQILLDA LDAANAAAGG GGHRSVHLID FEIGLGGQWS  300
SFAQEVASRS RAARAPPPGL RITAVVPEET GETALAAENL RDFARGLGVR LTVDFIRVGG  360
LGTLALNGIR LAPGEPVAVV LTPAIFRLLG AAPESSASLL RFVRRASPRV VVFVDTEWSY  420
FGDCAGHPPS LRRTVAGGIE HYAAVLESVE AAAVVSGATG PVEETVRRVE RTVVRPRIFS  480
AVGSWRSGRG GGWREAFAGA GIAPVGFSEF AESQAEWLVR GAQVDGYHVA RREGSMVLSW  540
RGRELASTSA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2320355236375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905080.10.0scarecrow-like protein 15
TrEMBLA0A2H3X4A40.0A0A2H3X4A4_PHODC; scarecrow-like protein 15
STRINGXP_008778087.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.16e-60GRAS family protein