PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010904856.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 317aa MW: 35131.7 Da PI: 9.9315

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010904856.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.6	1.1e-22	40	84	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 + sle++skyFslpi++AA+ Lgvc+ vLKriCR++GI RWP+Rk XP_010904856.1 40 KFSLEEISKYFSLPIAEAASILGVCTRVLKRICRENGIVRWPYRK 84 6799****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.256	23	107	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-21	41	85	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MTSTFELGNP PQRQQADHQL PSGGSAAASP VAAPPASGRK FSLEEISKYF SLPIAEAASI 60 LGVCTRVLKR ICRENGIVRW PYRKFLAGKT VEDIKKDTER ERTKDLTELP KMANQRTDVS 120 RVMPSSSTFG NQVQSRTLSG TQEALKLQRG VPMPGHVLQS QGNKFSHNNW PNMIQYRGIP 180 TYMDEFINGF PANGLSSVSI KWWGRSSKED TEKALPEETI KGDNQESCQL SNEISRHMVK 240 DDHPGGPDHS TEDSAAITEP SSSLCSLRRK AVECGRKTLK GGVSKGYTTY KLGKRQRLAL 300 FQVFKSSLPD QWMNALS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029116778.1	0.0	uncharacterized protein LOC105032179
Refseq	XP_029116779.1	0.0	uncharacterized protein LOC105032179
Refseq	XP_029116780.1	0.0	uncharacterized protein LOC105032179
Refseq	XP_029116781.1	0.0	uncharacterized protein LOC105032179
Refseq	XP_029116782.1	0.0	uncharacterized protein LOC105032179
TrEMBL	A0A2H3XJ13	1e-155	A0A2H3XJ13_PHODC; uncharacterized protein LOC103703346
STRING	XP_008784393.1	1e-155	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-11	RWP-RK domain-containing protein