PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010904731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 513aa MW: 56130.5 Da PI: 4.5947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.9e-18 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_010904731.1 37 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 84 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50 | 6.9e-16 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++ +G++ W++ a+ ++ gRt++++k++w++ XP_010904731.1 90 KGAFTQEEEQLIIELHATMGNK-WARMAALLP-GRTDNEIKNYWNT 133 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.691 | 32 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 36 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.86E-30 | 36 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.32E-12 | 39 | 84 | No hit | No description |
Pfam | PF13921 | 1.2E-15 | 40 | 100 | No hit | No description |
PROSITE profile | PS51294 | 25.216 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-16 | 89 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 92 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-11 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MNRSRNGSDN RLVPNDQTDS PSIDEGSSGG RGQILKKGPW TSAEDAILVD YVKKHGEGNW 60 NAVQKHSGLF RCGKSCRLRW ANHLRPNLKK GAFTQEEEQL IIELHATMGN KWARMAALLP 120 GRTDNEIKNY WNTRIKRRQR AGLPLYPPNL GLQASSENQQ SQTASEYSTG EKRPNDVLQG 180 NCFDIDVILN NSNADQGALS YASPFPDISV SSMLSQGFGS QDNNFMNPMW NSAKRLRESE 240 SVLPDFHGYL YDPEPSSKIM VPFDGAVPGS HALLNGNFSA SRPLGGTVKL ELPSLQYPET 300 VLNSWLACPS PPPDEIDTYI QSPPATVLVR SECVSPRNSG LLEALLHEAQ ARKIQQSEES 360 LSSAITQGDM VESSGFNLWE AECEEYNDPI SPLGRPAASV FSECTPPISG GSLDELQPSK 420 APSCSDIMVA ADKHVLAPNM GDRGILPCPD FLRPDALLEG SDWLENSEDA KEHSTLNDNV 480 VTVVDEDFCS EHKQLPTGMS SALAQGLDLD SYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 35 | 138 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010904731.1 | 0.0 | transcription factor GAMYB isoform X2 | ||||
Swissprot | A2WW87 | 1e-140 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A2H3XPS0 | 0.0 | A0A2H3XPS0_PHODC; transcription factor GAMYB-like isoform X2 | ||||
STRING | XP_008786776.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-104 | myb domain protein 65 |