PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904728.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 540aa    MW: 59146.9 Da    PI: 4.6296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904728.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-173784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_010904728.1 37 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 84
                     79******************************************9986 PP
2Myb_DNA-binding49.97.3e-1690133146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE++l++++++ +G++ W++ a+ ++ gRt++++k++w++
   XP_010904728.1  90 KGAFTQEEEQLIIELHATMGNK-WARMAALLP-GRTDNEIKNYWNT 133
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6913284IPR017930Myb domain
SMARTSM007174.1E-153686IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-3036131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-243891IPR009057Homeodomain-like
CDDcd001671.02E-113984No hitNo description
PfamPF139211.3E-1540100No hitNo description
PROSITE profilePS5129425.21685139IPR017930Myb domain
SMARTSM007174.2E-1689137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2592138IPR009057Homeodomain-like
CDDcd001672.10E-1192133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MNRSRNGSDN RLVPNDQTDS PSIDEGSSGG RGQILKKGPW TSAEDAILVD YVKKHGEGNW  60
NAVQKHSGLF RCGKSCRLRW ANHLRPNLKK GAFTQEEEQL IIELHATMGN KWARMAALLP  120
GRTDNEIKNY WNTRIKRRQR AGLPLYPPNL GLQASSENQQ SQTASEYSTG EKRPNDVLQG  180
NCFDIDVILN NSNADQGALS YASPFPDISV SSMLSQGFGS QDNNFMNPMW NSAKRLRESE  240
SVLPDFHGTV SCELPTCELF LHESSEKIHR TFGLGYLYDP EPSSKIMVPF DGAVPGSHAL  300
LNGNFSASRP LGGTVKLELP SLQYPETVLN SWLACPSPPP DEIDTYIQSP PATVLVRSEC  360
VSPRNSGLLE ALLHEAQARK IQQSEESLSS AITQGDMVES SGFNLWEAEC EEYNDPISPL  420
GRPAASVFSE CTPPISGGSL DELQPSKAPS CSDIMVAADK HVLAPNMGDR GILPCPDFLR  480
PDALLEGSDW LENSEDAKEH STLNDNVVTV VDEDFCSEHK QLPTGMSSAL AQGLDLDSYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33351385107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116727.10.0transcription factor GAMYB isoform X1
RefseqXP_029116728.10.0transcription factor GAMYB isoform X1
RefseqXP_029116730.10.0transcription factor GAMYB isoform X1
TrEMBLA0A2H3XPS00.0A0A2H3XPS0_PHODC; transcription factor GAMYB-like isoform X2
STRINGXP_008786776.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-108myb domain protein 33